| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633574
Identifier: 221633574
GI number: 221633574
Start: 1588238
End: 1590706
Strand: Reverse
Name: 221633574
Synonym: trd_1598
Alternate gene names: NA
Gene position: 1590706-1588238 (Counterclockwise)
Preceding gene: 221633575
Following gene: 221633573
Centisome position: 79.42
GC content: 68.61
Gene sequence:
>2469_bases ATGCAAACCGGACGACGACCGTCGCGGCTCTGGCGCGTTCTCCTGGCACTGGCGCTCGCGGCCAGCAGCCTCGCAGCGCT CCTGCCGAGCGCGCGAGCGGCCGCGCCGCTCAGCGAGCAGCAGGCGCGCGTCACGCTGGCAGCCGTGTACAACGCCGAAA CGTTGCCCGGCGGCTTCGGTCCGCTCTGGAGCACCGTCGTCGTGCAGAATCTGGAGGCGCTCCCGATCCAGATTCGCCTG CGCACTCAGCGGGTCGGTGGCACGATCCGCGGCCCGTACACGCTGGCACCACGGGCCACCCGCGCGTTCACGGCGGCCGA GCTCGCCGGACTCGGTCTAGTGCCGACCGGTGGGAGCGCTGGCCTGGTGATCGAGGCCGAGTTCCCCGACACGAGCCGCT CCATCCTGAGCGAGCTGGGCATCTGCACCATCTCGTGCAACCCAGCCATCAGTGTCGTCGCCAAGCATGCTGGGCCGAGC GCACTCGGCAACGACCTGCGGAGTTCGAGCGCCTTCCAGTTCGTCTCCGGCGCAACCGGCGCGCGCGACGACGACTGGGA TGCGGCGAACCAGGGCCGCAACTGGGTCCTCCCGGTCGTCCAGACCAACTCCGGCTGGAACACGGTGGTCAAGATCGCCA ACCTGCGCAACCAGCCGAACCAGGTCACCGTGACGCTGCTGCGCGCGCGGGGCGTCACCGTCGGGAATGCGAGCTACACG CTCACCCAGACGCTGGCGGCGGGCGAGACCTGGTCGCTGGACCTCGGGAGTGTCGTCCCGCCGGAATGGGTCGGTGCCGC CTTCATCGATGCCCAGCTGATCGGTGTCGCGGTGGTCGCCGAGCGGTACAAGCCGTCCTGGCGCATGCTCCTGACGAACG AGGCCGTACCGCGCACGAGCGCGAGCACGCGCTATGCCCCGATCGTCTTCCGCGACTACAACAACTGGAATACCGGGATC ACGCTGGTAAACCTGGACACGGCCAACACCAACACCCTGACGCTGACCTATTACGACCGCAACGGTCTCGCCCAGGTGGT CCCGCCCGAACTCTCCACCATCACGCTCCAGCCGGGGGAGAGCGCCTTCATCTATCGGCCGGACATCAGCGCGACCCCGA GCCTCGATCCCGCCCGGGTCAACGCGGTGGTCATCAGCGGGCAACGCCCGTTCGCAGCAGCGGTGGACGAAGTCAAGTAC CTGGCTGGTCCGGGTCAAGGGCAGGCGATGAGCTACATCGCGCCCGCAGCGCCGGACGTCGCGGGCAGCAAGCAGAGCTG GTCGGTGGCCGAGACGCAGGCGCGCACAGCGGGGCAGGTCACCGGCCAGGCCTGGTTCACCCACAGCCTGGCACTGCCGC TCTTCCAGGTCGGTGACGCCACCGGGCAGGGGGACACGAGCGGGTTCACGCTCTTCAATCCCACCGGTCGCCAGCAACTG GCCAATGTGCAGATCCTGAGTGCCAACGGCGCGGCAGTCGCTCCCAGCCAGGTGGGGACGAGCGAGAATCCGGTGCTCGT CGCTGTCCCGGCCGGCGGCTACGCGGTCATCTATCCCTACCCCAGCGACTTCGGCACGACCTTCGCCAGCGTGCCGCGCA CCTTCACCGGCACGGCGCTCGTCGGCGTGACGGACGGCGCCGGGAGCGGTACCGGCTTCCTGGTGGGGGTATCGAACGTC GTCAACTACCAGGTGGCTGGTGACGGCTCGGGTGTCTTCGTCCTCACGCCGACCCGCCATCCGGCACTGACCCTTTCGAA CTTCGCGCTGCGCCTCGAGCCGAGCGTGACGCTCGCAGTCGTCAACCAGGATGTCCCGTTGACCGCGACGCTGACCGCGG GCGACACCCCGCTCGCGGGACGCACGATCCGCTTCCGGGTGAGCAGCGAGGGAACCCCGAACCCGGTGAGCGGCGTGGCC GTCACCGATAGCGACGGGCATGCGTCCTTCACCTTCACCAACGGCACGGCCGACCGGACCAACACGGTCACCGCCTGGTG GGACCTGAACGGTAACGGCGAACAGGACGCGAACGAGCCGGCCGATACGAGCCGCGTCACCTGGGTGAGCAGCCTGACCG GCACCCTCTCGATCAGCGGATTGACGGGCGGCCCCGGCACGTACCAAGTCCGTGAAGGGGACCTCGCTGGCCCAGCCACC AAGACGGCCCAGGTCAGCTGCGACCTCGATCCGAACACGCCGACCGGTGTTCCGCTCCTGCTCCGCTTCACCAGCACGGA CGAAGCCACCACCGCGCGCTGGAGCAGCCAGCCGACCGCTAGCACGTCCGGCACCATCGCCGTGGTGACCAGCGGCGCGA ACAACGTGGCGACCGCGAACCTGATCCTGGTCGATGGGACTGCTGACAACTCCTACACCGTCACCTGCTACCTCGACTAC GGCGCGACCGGCGTGCTGGAGAGTACCGATCCATTGCTCGACACCGTCACGATCAACGTGACCAGCTGA
Upstream 100 bases:
>100_bases CGCTGCGGTGTTTCTGGGAGGCGGAGCCTGCTCGGCCAGGGCAGTCTCCGGTACACTCCTCCTTGCCGAAACGGTCGGAC GCACGGAAAGGAGGGTCACC
Downstream 100 bases:
>100_bases CGCAGCGCCTCGCGCATCCGCCCCGGGGCCACGGCCCCGGGGCGGTTTTCTCGGCGAGTGCGCTCGGCTACAATCGCGCC GGGAGCGCAGGACCCGCTGC
Product: putative hemagglutinin/hemolysin-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MQTGRRPSRLWRVLLALALAASSLAALLPSARAAAPLSEQQARVTLAAVYNAETLPGGFGPLWSTVVVQNLEALPIQIRL RTQRVGGTIRGPYTLAPRATRAFTAAELAGLGLVPTGGSAGLVIEAEFPDTSRSILSELGICTISCNPAISVVAKHAGPS ALGNDLRSSSAFQFVSGATGARDDDWDAANQGRNWVLPVVQTNSGWNTVVKIANLRNQPNQVTVTLLRARGVTVGNASYT LTQTLAAGETWSLDLGSVVPPEWVGAAFIDAQLIGVAVVAERYKPSWRMLLTNEAVPRTSASTRYAPIVFRDYNNWNTGI TLVNLDTANTNTLTLTYYDRNGLAQVVPPELSTITLQPGESAFIYRPDISATPSLDPARVNAVVISGQRPFAAAVDEVKY LAGPGQGQAMSYIAPAAPDVAGSKQSWSVAETQARTAGQVTGQAWFTHSLALPLFQVGDATGQGDTSGFTLFNPTGRQQL ANVQILSANGAAVAPSQVGTSENPVLVAVPAGGYAVIYPYPSDFGTTFASVPRTFTGTALVGVTDGAGSGTGFLVGVSNV VNYQVAGDGSGVFVLTPTRHPALTLSNFALRLEPSVTLAVVNQDVPLTATLTAGDTPLAGRTIRFRVSSEGTPNPVSGVA VTDSDGHASFTFTNGTADRTNTVTAWWDLNGNGEQDANEPADTSRVTWVSSLTGTLSISGLTGGPGTYQVREGDLAGPAT KTAQVSCDLDPNTPTGVPLLLRFTSTDEATTARWSSQPTASTSGTIAVVTSGANNVATANLILVDGTADNSYTVTCYLDY GATGVLESTDPLLDTVTINVTS
Sequences:
>Translated_822_residues MQTGRRPSRLWRVLLALALAASSLAALLPSARAAAPLSEQQARVTLAAVYNAETLPGGFGPLWSTVVVQNLEALPIQIRL RTQRVGGTIRGPYTLAPRATRAFTAAELAGLGLVPTGGSAGLVIEAEFPDTSRSILSELGICTISCNPAISVVAKHAGPS ALGNDLRSSSAFQFVSGATGARDDDWDAANQGRNWVLPVVQTNSGWNTVVKIANLRNQPNQVTVTLLRARGVTVGNASYT LTQTLAAGETWSLDLGSVVPPEWVGAAFIDAQLIGVAVVAERYKPSWRMLLTNEAVPRTSASTRYAPIVFRDYNNWNTGI TLVNLDTANTNTLTLTYYDRNGLAQVVPPELSTITLQPGESAFIYRPDISATPSLDPARVNAVVISGQRPFAAAVDEVKY LAGPGQGQAMSYIAPAAPDVAGSKQSWSVAETQARTAGQVTGQAWFTHSLALPLFQVGDATGQGDTSGFTLFNPTGRQQL ANVQILSANGAAVAPSQVGTSENPVLVAVPAGGYAVIYPYPSDFGTTFASVPRTFTGTALVGVTDGAGSGTGFLVGVSNV VNYQVAGDGSGVFVLTPTRHPALTLSNFALRLEPSVTLAVVNQDVPLTATLTAGDTPLAGRTIRFRVSSEGTPNPVSGVA VTDSDGHASFTFTNGTADRTNTVTAWWDLNGNGEQDANEPADTSRVTWVSSLTGTLSISGLTGGPGTYQVREGDLAGPAT KTAQVSCDLDPNTPTGVPLLLRFTSTDEATTARWSSQPTASTSGTIAVVTSGANNVATANLILVDGTADNSYTVTCYLDY GATGVLESTDPLLDTVTINVTS >Mature_822_residues MQTGRRPSRLWRVLLALALAASSLAALLPSARAAAPLSEQQARVTLAAVYNAETLPGGFGPLWSTVVVQNLEALPIQIRL RTQRVGGTIRGPYTLAPRATRAFTAAELAGLGLVPTGGSAGLVIEAEFPDTSRSILSELGICTISCNPAISVVAKHAGPS ALGNDLRSSSAFQFVSGATGARDDDWDAANQGRNWVLPVVQTNSGWNTVVKIANLRNQPNQVTVTLLRARGVTVGNASYT LTQTLAAGETWSLDLGSVVPPEWVGAAFIDAQLIGVAVVAERYKPSWRMLLTNEAVPRTSASTRYAPIVFRDYNNWNTGI TLVNLDTANTNTLTLTYYDRNGLAQVVPPELSTITLQPGESAFIYRPDISATPSLDPARVNAVVISGQRPFAAAVDEVKY LAGPGQGQAMSYIAPAAPDVAGSKQSWSVAETQARTAGQVTGQAWFTHSLALPLFQVGDATGQGDTSGFTLFNPTGRQQL ANVQILSANGAAVAPSQVGTSENPVLVAVPAGGYAVIYPYPSDFGTTFASVPRTFTGTALVGVTDGAGSGTGFLVGVSNV VNYQVAGDGSGVFVLTPTRHPALTLSNFALRLEPSVTLAVVNQDVPLTATLTAGDTPLAGRTIRFRVSSEGTPNPVSGVA VTDSDGHASFTFTNGTADRTNTVTAWWDLNGNGEQDANEPADTSRVTWVSSLTGTLSISGLTGGPGTYQVREGDLAGPAT KTAQVSCDLDPNTPTGVPLLLRFTSTDEATTARWSSQPTASTSGTIAVVTSGANNVATANLILVDGTADNSYTVTCYLDY GATGVLESTDPLLDTVTINVTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85461; Mature: 85461
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS51127 BIG1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTGRRPSRLWRVLLALALAASSLAALLPSARAAAPLSEQQARVTLAAVYNAETLPGGFG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCCC PLWSTVVVQNLEALPIQIRLRTQRVGGTIRGPYTLAPRATRAFTAAELAGLGLVPTGGSA HHHHHHHHHCCCCCEEEEEEEEEECCCEECCCEEECCCCHHHHHHHHHHCCEEEECCCCC GLVIEAEFPDTSRSILSELGICTISCNPAISVVAKHAGPSALGNDLRSSSAFQFVSGATG EEEEEECCCCCHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCCC ARDDDWDAANQGRNWVLPVVQTNSGWNTVVKIANLRNQPNQVTVTLLRARGVTVGNASYT CCCCCCCHHHCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCEEECCCCEE LTQTLAAGETWSLDLGSVVPPEWVGAAFIDAQLIGVAVVAERYKPSWRMLLTNEAVPRTS EEEEEECCCEEEEECCCCCCCHHHCHHHHHHHHHHHEEEHHHCCCCEEEEEECCCCCCCC ASTRYAPIVFRDYNNWNTGITLVNLDTANTNTLTLTYYDRNGLAQVVPPELSTITLQPGE CCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCCEEEEECCCC SAFIYRPDISATPSLDPARVNAVVISGQRPFAAAVDEVKYLAGPGQGQAMSYIAPAAPDV CEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHEECCCCCCCEEEEECCCCCCC AGSKQSWSVAETQARTAGQVTGQAWFTHSLALPLFQVGDATGQGDTSGFTLFNPTGRQQL CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCEEEECCCCCCEE ANVQILSANGAAVAPSQVGTSENPVLVAVPAGGYAVIYPYPSDFGTTFASVPRTFTGTAL CEEEEEECCCCEECHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHCCCCCCCEEE VGVTDGAGSGTGFLVGVSNVVNYQVAGDGSGVFVLTPTRHPALTLSNFALRLEPSVTLAV EEEECCCCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCEEEEECEEEEECCCEEEEE VNQDVPLTATLTAGDTPLAGRTIRFRVSSEGTPNPVSGVAVTDSDGHASFTFTNGTADRT EECCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC NTVTAWWDLNGNGEQDANEPADTSRVTWVSSLTGTLSISGLTGGPGTYQVREGDLAGPAT CEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEEEECCCCCCCCC KTAQVSCDLDPNTPTGVPLLLRFTSTDEATTARWSSQPTASTSGTIAVVTSGANNVATAN CEEEEEEECCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEE LILVDGTADNSYTVTCYLDYGATGVLESTDPLLDTVTINVTS EEEEECCCCCCEEEEEEECCCCCEEECCCCCCEEEEEEEEEC >Mature Secondary Structure MQTGRRPSRLWRVLLALALAASSLAALLPSARAAAPLSEQQARVTLAAVYNAETLPGGFG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCCC PLWSTVVVQNLEALPIQIRLRTQRVGGTIRGPYTLAPRATRAFTAAELAGLGLVPTGGSA HHHHHHHHHCCCCCEEEEEEEEEECCCEECCCEEECCCCHHHHHHHHHHCCEEEECCCCC GLVIEAEFPDTSRSILSELGICTISCNPAISVVAKHAGPSALGNDLRSSSAFQFVSGATG EEEEEECCCCCHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCCC ARDDDWDAANQGRNWVLPVVQTNSGWNTVVKIANLRNQPNQVTVTLLRARGVTVGNASYT CCCCCCCHHHCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCEEECCCCEE LTQTLAAGETWSLDLGSVVPPEWVGAAFIDAQLIGVAVVAERYKPSWRMLLTNEAVPRTS EEEEEECCCEEEEECCCCCCCHHHCHHHHHHHHHHHEEEHHHCCCCEEEEEECCCCCCCC ASTRYAPIVFRDYNNWNTGITLVNLDTANTNTLTLTYYDRNGLAQVVPPELSTITLQPGE CCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCCEEEEECCCC SAFIYRPDISATPSLDPARVNAVVISGQRPFAAAVDEVKYLAGPGQGQAMSYIAPAAPDV CEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHEECCCCCCCEEEEECCCCCCC AGSKQSWSVAETQARTAGQVTGQAWFTHSLALPLFQVGDATGQGDTSGFTLFNPTGRQQL CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCEEEECCCCCCEE ANVQILSANGAAVAPSQVGTSENPVLVAVPAGGYAVIYPYPSDFGTTFASVPRTFTGTAL CEEEEEECCCCEECHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHCCCCCCCEEE VGVTDGAGSGTGFLVGVSNVVNYQVAGDGSGVFVLTPTRHPALTLSNFALRLEPSVTLAV EEEECCCCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCEEEEECEEEEECCCEEEEE VNQDVPLTATLTAGDTPLAGRTIRFRVSSEGTPNPVSGVAVTDSDGHASFTFTNGTADRT EECCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCC NTVTAWWDLNGNGEQDANEPADTSRVTWVSSLTGTLSISGLTGGPGTYQVREGDLAGPAT CEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEEEECCCCCCCCC KTAQVSCDLDPNTPTGVPLLLRFTSTDEATTARWSSQPTASTSGTIAVVTSGANNVATAN CEEEEEEECCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEE LILVDGTADNSYTVTCYLDYGATGVLESTDPLLDTVTINVTS EEEEECCCCCCEEEEEEECCCCCEEECCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA