| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633455
Identifier: 221633455
GI number: 221633455
Start: 1464138
End: 1465208
Strand: Reverse
Name: 221633455
Synonym: trd_1477
Alternate gene names: NA
Gene position: 1465208-1464138 (Counterclockwise)
Preceding gene: 221633456
Following gene: 221633450
Centisome position: 73.15
GC content: 65.73
Gene sequence:
>1071_bases GTGGCAGCCGATCGCCTGCCGGAGGAGCTGATCCGGCGGATTCGCGAAGATGCCGAGTTCCGGCGCCTCCTCCTGGAGGT CTTGCTCGGCGAAGAGTTTTTGCAACTTCCAGCGGGCGTCCGGCGCATCGAGCAAGCGGTCGATCGATTGATCGAGGCGA TGGAACGAGATCGGCAAGCAGCGCGCGAGCGCGAGGCCCGGATCGACGCGCAGATCGAGCGACTCGGCCAGCGCATCGAT GACGTGGCGCGTTCGATCGATCGATTGGCCGATCGCGTCGAGGCCCAGATCGAGGCGCTGACAAAGCGGATGGAGCGGGT CGAGGCGCAGATCGAGGCGTTGACTGCCCGCATGGAGCGGGTGGAAGCCCAGATCGAGGCCTTGACACAGCGGATGGAGC GCGTCGAAGGCCAGATCGAGGCCTTGACGCAGCGGATGGAGCGGGTCGAGGCGCAGATCGAGGCGCTGACAAAGCGGATG GAGCGGGTGGAAGATCGTCTCGGTTCGGTCGAAGAGCGTCTCGGCTCGGTCGAAGAGCGCGTCGGATCGCTCGAAGAGCG TGTCGGATCGGTCGAGGACGAACTGGTCAGGGTACGCAACCGTCTCGATGACCTGACTGGCAAGGCTCTGGAGCAGTACT ATCGCGAGCGCGCGCCAGCGATTTTCGGTCGCCGACTGCGACGTGTCCGCGCGATGGCGATCGGGCAGTTGGCTGAACTC ATCACCGAGCGGCTTCCCGGCCCGGAGGGGGACGATCTGTTCGAAGCCGACCTCGTCGTCTCAGGTCGGCTGTCCACAGC CGAGCAGCCTGAGGTATGGGTCGTCATCGAAGTGTCCGCGACGGTCGATCGCTTCGATGTGGAGCGGGCGGTTCGTCGTG CGACTGCGCTGCGCCAGCTCCACCCCCTCGTCTTGCCCGGCGTGGCAGGTGTCCGGCTGACCGAGGGTGGACGGGAACTG GCGAGCGAAGCTGGCGTTATCGTGATCACGGACGGTAAGGCGACCGGTTGGGAGGCTGCTCTGGCTCGCTGGCTGCCGAG CGACGAAACAATGGACGACGCGCTCGGCTGA
Upstream 100 bases:
>100_bases TTTCGCTCCCTCGCCGGACTATGCTCGATCCGGAATGCGAGTCGCTTGCGCCGGGCTATTCGTCCTCGCAGACAAGCAGC GACGGAAGGAGCATGCGAGC
Downstream 100 bases:
>100_bases TCTGGTTCTGGTGTGGCTCGTGTTCGCCGCGCTATCCGGTGGTGCAGCCGGATCATGTGCGTGGATAGTGGCACGGAATA GCGTCGCGCGCAGTCATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MAADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQAAREREARIDAQIERLGQRID DVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMERVEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRM ERVEDRLGSVEERLGSVEERVGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQLHPLVLPGVAGVRLTEGGREL ASEAGVIVITDGKATGWEAALARWLPSDETMDDALG
Sequences:
>Translated_356_residues MAADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQAAREREARIDAQIERLGQRID DVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMERVEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRM ERVEDRLGSVEERLGSVEERVGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQLHPLVLPGVAGVRLTEGGREL ASEAGVIVITDGKATGWEAALARWLPSDETMDDALG >Mature_355_residues AADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQAAREREARIDAQIERLGQRIDD VARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMERVEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRME RVEDRLGSVEERLGSVEERVGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAELI TERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQLHPLVLPGVAGVRLTEGGRELA SEAGVIVITDGKATGWEAALARWLPSDETMDDALG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0134 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002862 [H]
Pfam domain/function: PF01519 DUF16 [H]
EC number: NA
Molecular weight: Translated: 40408; Mature: 40276
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AREREARIDAQIERLGQRIDDVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRMERVEDRLGSVEERLGSVEER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQL HHHHCCCCCCCCHHHHHHHEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH HPLVLPGVAGVRLTEGGRELASEAGVIVITDGKATGWEAALARWLPSDETMDDALG HHHHCCCCCCCEECCCHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCHHHCCC >Mature Secondary Structure AADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AREREARIDAQIERLGQRIDDVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRMERVEDRLGSVEERLGSVEER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQL HHHHCCCCCCCCHHHHHHHEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH HPLVLPGVAGVRLTEGGRELASEAGVIVITDGKATGWEAALARWLPSDETMDDALG HHHHCCCCCCCEECCCHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]