Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

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The map label for this gene is 221633455

Identifier: 221633455

GI number: 221633455

Start: 1464138

End: 1465208

Strand: Reverse

Name: 221633455

Synonym: trd_1477

Alternate gene names: NA

Gene position: 1465208-1464138 (Counterclockwise)

Preceding gene: 221633456

Following gene: 221633450

Centisome position: 73.15

GC content: 65.73

Gene sequence:

>1071_bases
GTGGCAGCCGATCGCCTGCCGGAGGAGCTGATCCGGCGGATTCGCGAAGATGCCGAGTTCCGGCGCCTCCTCCTGGAGGT
CTTGCTCGGCGAAGAGTTTTTGCAACTTCCAGCGGGCGTCCGGCGCATCGAGCAAGCGGTCGATCGATTGATCGAGGCGA
TGGAACGAGATCGGCAAGCAGCGCGCGAGCGCGAGGCCCGGATCGACGCGCAGATCGAGCGACTCGGCCAGCGCATCGAT
GACGTGGCGCGTTCGATCGATCGATTGGCCGATCGCGTCGAGGCCCAGATCGAGGCGCTGACAAAGCGGATGGAGCGGGT
CGAGGCGCAGATCGAGGCGTTGACTGCCCGCATGGAGCGGGTGGAAGCCCAGATCGAGGCCTTGACACAGCGGATGGAGC
GCGTCGAAGGCCAGATCGAGGCCTTGACGCAGCGGATGGAGCGGGTCGAGGCGCAGATCGAGGCGCTGACAAAGCGGATG
GAGCGGGTGGAAGATCGTCTCGGTTCGGTCGAAGAGCGTCTCGGCTCGGTCGAAGAGCGCGTCGGATCGCTCGAAGAGCG
TGTCGGATCGGTCGAGGACGAACTGGTCAGGGTACGCAACCGTCTCGATGACCTGACTGGCAAGGCTCTGGAGCAGTACT
ATCGCGAGCGCGCGCCAGCGATTTTCGGTCGCCGACTGCGACGTGTCCGCGCGATGGCGATCGGGCAGTTGGCTGAACTC
ATCACCGAGCGGCTTCCCGGCCCGGAGGGGGACGATCTGTTCGAAGCCGACCTCGTCGTCTCAGGTCGGCTGTCCACAGC
CGAGCAGCCTGAGGTATGGGTCGTCATCGAAGTGTCCGCGACGGTCGATCGCTTCGATGTGGAGCGGGCGGTTCGTCGTG
CGACTGCGCTGCGCCAGCTCCACCCCCTCGTCTTGCCCGGCGTGGCAGGTGTCCGGCTGACCGAGGGTGGACGGGAACTG
GCGAGCGAAGCTGGCGTTATCGTGATCACGGACGGTAAGGCGACCGGTTGGGAGGCTGCTCTGGCTCGCTGGCTGCCGAG
CGACGAAACAATGGACGACGCGCTCGGCTGA

Upstream 100 bases:

>100_bases
TTTCGCTCCCTCGCCGGACTATGCTCGATCCGGAATGCGAGTCGCTTGCGCCGGGCTATTCGTCCTCGCAGACAAGCAGC
GACGGAAGGAGCATGCGAGC

Downstream 100 bases:

>100_bases
TCTGGTTCTGGTGTGGCTCGTGTTCGCCGCGCTATCCGGTGGTGCAGCCGGATCATGTGCGTGGATAGTGGCACGGAATA
GCGTCGCGCGCAGTCATCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MAADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQAAREREARIDAQIERLGQRID
DVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMERVEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRM
ERVEDRLGSVEERLGSVEERVGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL
ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQLHPLVLPGVAGVRLTEGGREL
ASEAGVIVITDGKATGWEAALARWLPSDETMDDALG

Sequences:

>Translated_356_residues
MAADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQAAREREARIDAQIERLGQRID
DVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMERVEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRM
ERVEDRLGSVEERLGSVEERVGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL
ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQLHPLVLPGVAGVRLTEGGREL
ASEAGVIVITDGKATGWEAALARWLPSDETMDDALG
>Mature_355_residues
AADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQAAREREARIDAQIERLGQRIDD
VARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMERVEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRME
RVEDRLGSVEERLGSVEERVGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAELI
TERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQLHPLVLPGVAGVRLTEGGRELA
SEAGVIVITDGKATGWEAALARWLPSDETMDDALG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0134 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002862 [H]

Pfam domain/function: PF01519 DUF16 [H]

EC number: NA

Molecular weight: Translated: 40408; Mature: 40276

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AREREARIDAQIERLGQRIDDVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRMERVEDRLGSVEERLGSVEER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQL
HHHHCCCCCCCCHHHHHHHEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
HPLVLPGVAGVRLTEGGRELASEAGVIVITDGKATGWEAALARWLPSDETMDDALG
HHHHCCCCCCCEECCCHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCHHHCCC
>Mature Secondary Structure 
AADRLPEELIRRIREDAEFRRLLLEVLLGEEFLQLPAGVRRIEQAVDRLIEAMERDRQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AREREARIDAQIERLGQRIDDVARSIDRLADRVEAQIEALTKRMERVEAQIEALTARMER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEAQIEALTQRMERVEGQIEALTQRMERVEAQIEALTKRMERVEDRLGSVEERLGSVEER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSLEERVGSVEDELVRVRNRLDDLTGKALEQYYRERAPAIFGRRLRRVRAMAIGQLAEL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ITERLPGPEGDDLFEADLVVSGRLSTAEQPEVWVVIEVSATVDRFDVERAVRRATALRQL
HHHHCCCCCCCCHHHHHHHEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
HPLVLPGVAGVRLTEGGRELASEAGVIVITDGKATGWEAALARWLPSDETMDDALG
HHHHCCCCCCCEECCCHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]