Click here to switch to the map view.

The map label for this gene is trkA [H]

Identifier: 221633456

GI number: 221633456

Start: 1465375

End: 1466043

Strand: Reverse

Name: trkA [H]

Synonym: trd_1478

Alternate gene names: 221633456

Gene position: 1466043-1465375 (Counterclockwise)

Preceding gene: 221633457

Following gene: 221633455

Centisome position: 73.19

GC content: 61.73

Gene sequence:

>669_bases
ATGTACATCATCGTCGTTGGTGGTGGAAAGGTCGGGTACTATCTCACGAAAACGCTCGTCAACGAGGGATACGAGGTCTT
CCTCGTCGAGAAGAACCCGGTCAAAGTGCAAATCTATCGCGACCGTTTCGGTGCGATCGTCATGCAGGGAGACGGGGCCG
AGGTCGCGACACTGGCGGCAGCTGGTGCGGGGCGTGCCGATGTGGTGATCGCGGTCACTGGTGACGACGAGGACAATCTG
GTGATTTGCCAGGTGGCGCGCGAGCGGTTCGGTGTTCGGCGAACGATCGCTCGCGTGAACAACCCGAAGAACGAGGAGCT
CTTCCGCCGGCTCGGGATCGACGTCACCGTGAGTCAAACGAACGTCATCTTGAGTCTGATCGAGCAACAGATCCCCGAGC
GACCCTTCGTCCACCTCTTGGCTCTCCGGCACGCCGATCTGGCTATCGTGGAAGCCAAAGTCGCCGCCGAATCGCCGGTC
GTCAACCAGCCGATCTGGCAGCTCCCCTTGCCGCCCGAGGCGATCATCACGGCGATCATCCGCCGGGGGGAGCTGATCAT
TCCGACCGGCCAGACGGTCATAGAGCCGGGAGACGAGTTGATCATCGTGACCAAGCAGCAGCGCGAGGCCGAACTTCGCG
AGCTCCTGTGTGCTCCGGCAACGGCCTGA

Upstream 100 bases:

>100_bases
ACCCGGACCGTCTCGGAGATGATCGAGCAAGCTGTGCGCGATGAACTCGTGACCAAGACCAGCTGAGCATCCTTCGAAAG
CTGGGTGGGGAGCGTCCGCG

Downstream 100 bases:

>100_bases
GCGTGTCCCTCTCGATCGCTGACAGGTTCTCGACGAGTGTGCCTCGTCCACCGAGGCATGCCTTGTTTTCGCTCCCTCGC
CGGACTATGCTCGATCCGGA

Product: potassium channel-like protein

Products: NA

Alternate protein names: K(+)-uptake protein trkA homolog [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MYIIVVGGGKVGYYLTKTLVNEGYEVFLVEKNPVKVQIYRDRFGAIVMQGDGAEVATLAAAGAGRADVVIAVTGDDEDNL
VICQVARERFGVRRTIARVNNPKNEELFRRLGIDVTVSQTNVILSLIEQQIPERPFVHLLALRHADLAIVEAKVAAESPV
VNQPIWQLPLPPEAIITAIIRRGELIIPTGQTVIEPGDELIIVTKQQREAELRELLCAPATA

Sequences:

>Translated_222_residues
MYIIVVGGGKVGYYLTKTLVNEGYEVFLVEKNPVKVQIYRDRFGAIVMQGDGAEVATLAAAGAGRADVVIAVTGDDEDNL
VICQVARERFGVRRTIARVNNPKNEELFRRLGIDVTVSQTNVILSLIEQQIPERPFVHLLALRHADLAIVEAKVAAESPV
VNQPIWQLPLPPEAIITAIIRRGELIIPTGQTVIEPGDELIIVTKQQREAELRELLCAPATA
>Mature_222_residues
MYIIVVGGGKVGYYLTKTLVNEGYEVFLVEKNPVKVQIYRDRFGAIVMQGDGAEVATLAAAGAGRADVVIAVTGDDEDNL
VICQVARERFGVRRTIARVNNPKNEELFRRLGIDVTVSQTNVILSLIEQQIPERPFVHLLALRHADLAIVEAKVAAESPV
VNQPIWQLPLPPEAIITAIIRRGELIIPTGQTVIEPGDELIIVTKQQREAELRELLCAPATA

Specific function: Part of a potassium transport system [H]

COG id: COG0569

COG function: function code P; K+ transport systems, NAD-binding component

Gene ontology:

Cell location: Peripherally Bound To The Inner Side Of The Inner Membrane Via The Trkg And Trkh Proteins [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RCK N-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789685, Length=217, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006036
- InterPro:   IPR016040
- InterPro:   IPR006037
- InterPro:   IPR003148 [H]

Pfam domain/function: PF02080 TrkA_C; PF02254 TrkA_N [H]

EC number: NA

Molecular weight: Translated: 24324; Mature: 24324

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIIVVGGGKVGYYLTKTLVNEGYEVFLVEKNPVKVQIYRDRFGAIVMQGDGAEVATLAA
CEEEEEECCCCHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCEEEEEE
AGAGRADVVIAVTGDDEDNLVICQVARERFGVRRTIARVNNPKNEELFRRLGIDVTVSQT
CCCCCCEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECHH
NVILSLIEQQIPERPFVHLLALRHADLAIVEAKVAAESPVVNQPIWQLPLPPEAIITAII
HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCEECCCCHHHHHHHHH
RRGELIIPTGQTVIEPGDELIIVTKQQREAELRELLCAPATA
HCCCEEEECCCEEECCCCCEEEEECCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MYIIVVGGGKVGYYLTKTLVNEGYEVFLVEKNPVKVQIYRDRFGAIVMQGDGAEVATLAA
CEEEEEECCCCHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCEEEEEE
AGAGRADVVIAVTGDDEDNLVICQVARERFGVRRTIARVNNPKNEELFRRLGIDVTVSQT
CCCCCCEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECHH
NVILSLIEQQIPERPFVHLLALRHADLAIVEAKVAAESPVVNQPIWQLPLPPEAIITAII
HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCEECCCCHHHHHHHHH
RRGELIIPTGQTVIEPGDELIIVTKQQREAELRELLCAPATA
HCCCEEEECCCEEECCCCCEEEEECCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]