| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is resA [H]
Identifier: 221633208
GI number: 221633208
Start: 1211542
End: 1212150
Strand: Reverse
Name: resA [H]
Synonym: trd_1225
Alternate gene names: 221633208
Gene position: 1212150-1211542 (Counterclockwise)
Preceding gene: 221633209
Following gene: 221633207
Centisome position: 60.52
GC content: 63.71
Gene sequence:
>609_bases ATGACGACGACACAGGGGCTGTGGCGTGCACGATTGCCGGTTCTCATTGCGGGGGTGTTCGTGCTCGCCTTCGTCGCGCT GGTTGCCGTCGCATTCGAACGGCAACGTGGGACGAGCGAACTCGGAGCAGGTGGCCGCATCAACACGGTCGGGACCTTCA TCCGCTTTGCGAATCGTGCAGCGCCCGACTTCACACTGCCCGATCTCCGGGGCGGGAAAGACATCGCGCTCGCTGACCTG CGTGGTCAGGTGGTCATCGTCAATTTCTGGGGATCCTGGTGCCCGCCATGCCGCGAGGAGGCGCCGGTGCTGGCTGCCTT CGCCCGCGAGTATGCGGACGACGGCGTCACCGTCGTCGGGATCGACGTCTGGGAAAAGGATTGGAACGACGGACGGGCCT TTCTCGAGGAGTTCCGGGTCGACTATCCGAACGTGTACGATGCCCGCGGCCGTGTCACGATCGACTACGGGGTTTCCGGT GTCCCGGAGACCTTCTTCATCGGCCCAGACGGGCAGTTGCTCGGGAAGTACACCGGCCCACTCAAGTCGGCCGATCAACT TCTGAGCATCCTCGCGGAACTCGGTATTACCCTCAGCCCGATGCGCTGA
Upstream 100 bases:
>100_bases TTGCGACGTGGCTACGAGGACTTGGTGGGCAAGCTGGCCGCGCTGGGCGCAGACATCCACTACGCGTGAGTCTGTTCGCG CCGAGGGAGCTCGGTACCCC
Downstream 100 bases:
>100_bases AGGATGCACCGAATGGAGCAGATCGATATCGCGGCGTTCGTGCGGATCGTGCTGCGGCTCGTCCATGCTCTCGCCGGCGC CATCTGGCTCGGCAGCGGAG
Product: c-type cytochrome biogenesis protein/thioredoxin dsbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MTTTQGLWRARLPVLIAGVFVLAFVALVAVAFERQRGTSELGAGGRINTVGTFIRFANRAAPDFTLPDLRGGKDIALADL RGQVVIVNFWGSWCPPCREEAPVLAAFAREYADDGVTVVGIDVWEKDWNDGRAFLEEFRVDYPNVYDARGRVTIDYGVSG VPETFFIGPDGQLLGKYTGPLKSADQLLSILAELGITLSPMR
Sequences:
>Translated_202_residues MTTTQGLWRARLPVLIAGVFVLAFVALVAVAFERQRGTSELGAGGRINTVGTFIRFANRAAPDFTLPDLRGGKDIALADL RGQVVIVNFWGSWCPPCREEAPVLAAFAREYADDGVTVVGIDVWEKDWNDGRAFLEEFRVDYPNVYDARGRVTIDYGVSG VPETFFIGPDGQLLGKYTGPLKSADQLLSILAELGITLSPMR >Mature_201_residues TTTQGLWRARLPVLIAGVFVLAFVALVAVAFERQRGTSELGAGGRINTVGTFIRFANRAAPDFTLPDLRGGKDIALADLR GQVVIVNFWGSWCPPCREEAPVLAAFAREYADDGVTVVGIDVWEKDWNDGRAFLEEFRVDYPNVYDARGRVTIDYGVSGV PETFFIGPDGQLLGKYTGPLKSADQLLSILAELGITLSPMR
Specific function: Thiol-disulfide oxidoreductase which is required in disulfide reduction during c-type cytochrome synthesis. May accept reducing equivalents from CcdA, leading to breakage of disulfide bonds in apocytochrome c; following this reduction heme can be covalent
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein. Note=The thioredoxin-like motif is exposed on the outside of the membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788523, Length=127, Percent_Identity=30.7086614173228, Blast_Score=63, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: NA
Molecular weight: Translated: 22054; Mature: 21923
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTQGLWRARLPVLIAGVFVLAFVALVAVAFERQRGTSELGAGGRINTVGTFIRFANRA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCC APDFTLPDLRGGKDIALADLRGQVVIVNFWGSWCPPCREEAPVLAAFAREYADDGVTVVG CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE IDVWEKDWNDGRAFLEEFRVDYPNVYDARGRVTIDYGVSGVPETFFIGPDGQLLGKYTGP EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCEECCCCCC LKSADQLLSILAELGITLSPMR CCCHHHHHHHHHHCCCEECCCC >Mature Secondary Structure TTTQGLWRARLPVLIAGVFVLAFVALVAVAFERQRGTSELGAGGRINTVGTFIRFANRA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCC APDFTLPDLRGGKDIALADLRGQVVIVNFWGSWCPPCREEAPVLAAFAREYADDGVTVVG CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE IDVWEKDWNDGRAFLEEFRVDYPNVYDARGRVTIDYGVSGVPETFFIGPDGQLLGKYTGP EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCEECCCCCC LKSADQLLSILAELGITLSPMR CCCHHHHHHHHHHCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715; 12637552 [H]