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The map label for this gene is yajR [H]

Identifier: 221633141

GI number: 221633141

Start: 1144895

End: 1146118

Strand: Reverse

Name: yajR [H]

Synonym: trd_1157

Alternate gene names: 221633141

Gene position: 1146118-1144895 (Counterclockwise)

Preceding gene: 221633151

Following gene: 221633140

Centisome position: 57.22

GC content: 64.87

Gene sequence:

>1224_bases
ATGGGAGAGCGGCTCGTCGGTTGGTCTCGCGCCTCGCAGCGCACGCTTTTCTGGGTGATTCGCCTGCTCGTCTTCGCTGC
TTTCTTCGATCTCTTCGTCCAGTATCCGATCGCTGCTCCGTATGCAACGACGCTCGGCGCGGGCCCGGCACTCGTCGGGC
TGATCGTCGCCGCCTACTCGATGGCGAATTTGGGAGCGAACCTGGTCGCTGGAGCGCTCCTCGATCGGTTGGGGCGGAGC
GGGCCGCTCTTGGCGAGTCTCCTGCTCACGGCTTTGACGGTCGCTTGCTATGCCCTGGTGAGCACACCTGGACAACTGCT
CGGTCTTCGGCTCGTTCATGGCGTCGTGGTCGCTGTTCTGGCTCCCGGGGCGTTCGCCTTGGTGGGAGATTTGGCCCCGC
CTGAGCAACGCGGGCGGCTGATGGGAACTAATGGCGCGATGATCGCGCTCGCGGCGATCGTCGCTCCTGCTATCGCTGGC
ATCCTGCAGGAGCGCGCCGGATACGCTGCTGTTTTCCTCCTCGATGCTCTCGTGCTCACAGGGGCTGGCATCGTTTTTCT
GGGTTTCTGGAAGCGTGTCGCCCGGAGTGGGCCAGTACGAGATCGGGAGTCCTCCGCGACCGGGGGATGGAGTGGGTTGA
TCCGGCAAGAGATCGGCCCGTTCGCGACGATACTCGCCTTTGCTATCGCGCTCGGCATCTTCGTCACGCACGTGCCGGAA
CGGCTCGAGTTCCTCGGGATTCCTGCTTCCGTTCGTGGCGCTGCGTTCAGCACGTACGGTATTTTGGCTGCGCTCGTCAT
GATCAGTCCGCTGCCGAGCCGTTTCCTGCGCCGAGCTGGGCTTCAGGCGAGTGCAGCGGGACTCTCGCTCATCAGTATCG
GCTTGCTCGTCGCCAGTGCCGTTCGGTCGGTTTCGCCGGCCTCTCTCGAGCAGCTAACCCTGATCGGTGCGGCGATCTTC
GGCATCGGCTTCGGGCTGCTCTTCCCGACGGTGACGGCGGAGGCCGCGCGTCGATCACCGCCGGGCATGCGCGGACGGGC
GTTCGGCGTCTTCTACGCACTCTATTCCCTCGGCGTAGTCCTGGGTGCATTAGCGAGCGGCTGGTTGACCGAGTTCGTTG
GGCGGGCCTCGGGCTGGCCGCTCGTGGCTGGTGCAGCGGTGGCTGCACTGGGTTGTGTGGTTCCGTTCCTCGAGCGACGC
ACCCGCGAGGAAGTCGCGTTATGA

Upstream 100 bases:

>100_bases
CGCTAGTTTGCCGAATCAGAATCATTTTGCGCTGAACAGCCGTTCGAGATCTGCTCAATCCGTGCCGTTCACGTATGATC
AACGAAGGGAAGGAGCGGGT

Downstream 100 bases:

>100_bases
CGGTGTGTTTGGGGAAGCCCCTGAGTGAGTTCACGGAGAAGTCTTTCCAGTCCCTCGGAGAGCGCAGCCACTATCTCGGG
TGGCAAGCGATGCGCGGCGA

Product: multidrug-efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MGERLVGWSRASQRTLFWVIRLLVFAAFFDLFVQYPIAAPYATTLGAGPALVGLIVAAYSMANLGANLVAGALLDRLGRS
GPLLASLLLTALTVACYALVSTPGQLLGLRLVHGVVVAVLAPGAFALVGDLAPPEQRGRLMGTNGAMIALAAIVAPAIAG
ILQERAGYAAVFLLDALVLTGAGIVFLGFWKRVARSGPVRDRESSATGGWSGLIRQEIGPFATILAFAIALGIFVTHVPE
RLEFLGIPASVRGAAFSTYGILAALVMISPLPSRFLRRAGLQASAAGLSLISIGLLVASAVRSVSPASLEQLTLIGAAIF
GIGFGLLFPTVTAEAARRSPPGMRGRAFGVFYALYSLGVVLGALASGWLTEFVGRASGWPLVAGAAVAALGCVVPFLERR
TREEVAL

Sequences:

>Translated_407_residues
MGERLVGWSRASQRTLFWVIRLLVFAAFFDLFVQYPIAAPYATTLGAGPALVGLIVAAYSMANLGANLVAGALLDRLGRS
GPLLASLLLTALTVACYALVSTPGQLLGLRLVHGVVVAVLAPGAFALVGDLAPPEQRGRLMGTNGAMIALAAIVAPAIAG
ILQERAGYAAVFLLDALVLTGAGIVFLGFWKRVARSGPVRDRESSATGGWSGLIRQEIGPFATILAFAIALGIFVTHVPE
RLEFLGIPASVRGAAFSTYGILAALVMISPLPSRFLRRAGLQASAAGLSLISIGLLVASAVRSVSPASLEQLTLIGAAIF
GIGFGLLFPTVTAEAARRSPPGMRGRAFGVFYALYSLGVVLGALASGWLTEFVGRASGWPLVAGAAVAALGCVVPFLERR
TREEVAL
>Mature_406_residues
GERLVGWSRASQRTLFWVIRLLVFAAFFDLFVQYPIAAPYATTLGAGPALVGLIVAAYSMANLGANLVAGALLDRLGRSG
PLLASLLLTALTVACYALVSTPGQLLGLRLVHGVVVAVLAPGAFALVGDLAPPEQRGRLMGTNGAMIALAAIVAPAIAGI
LQERAGYAAVFLLDALVLTGAGIVFLGFWKRVARSGPVRDRESSATGGWSGLIRQEIGPFATILAFAIALGIFVTHVPER
LEFLGIPASVRGAAFSTYGILAALVMISPLPSRFLRRAGLQASAAGLSLISIGLLVASAVRSVSPASLEQLTLIGAAIFG
IGFGLLFPTVTAEAARRSPPGMRGRAFGVFYALYSLGVVLGALASGWLTEFVGRASGWPLVAGAAVAALGCVVPFLERRT
REEVAL

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081738, Length=352, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42076; Mature: 41945

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGERLVGWSRASQRTLFWVIRLLVFAAFFDLFVQYPIAAPYATTLGAGPALVGLIVAAYS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHH
MANLGANLVAGALLDRLGRSGPLLASLLLTALTVACYALVSTPGQLLGLRLVHGVVVAVL
HHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
APGAFALVGDLAPPEQRGRLMGTNGAMIALAAIVAPAIAGILQERAGYAAVFLLDALVLT
CCCHHHHHCCCCCHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
GAGIVFLGFWKRVARSGPVRDRESSATGGWSGLIRQEIGPFATILAFAIALGIFVTHVPE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLEFLGIPASVRGAAFSTYGILAALVMISPLPSRFLRRAGLQASAAGLSLISIGLLVASA
HHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VRSVSPASLEQLTLIGAAIFGIGFGLLFPTVTAEAARRSPPGMRGRAFGVFYALYSLGVV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LGALASGWLTEFVGRASGWPLVAGAAVAALGCVVPFLERRTREEVAL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GERLVGWSRASQRTLFWVIRLLVFAAFFDLFVQYPIAAPYATTLGAGPALVGLIVAAYS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHH
MANLGANLVAGALLDRLGRSGPLLASLLLTALTVACYALVSTPGQLLGLRLVHGVVVAVL
HHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
APGAFALVGDLAPPEQRGRLMGTNGAMIALAAIVAPAIAGILQERAGYAAVFLLDALVLT
CCCHHHHHCCCCCHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
GAGIVFLGFWKRVARSGPVRDRESSATGGWSGLIRQEIGPFATILAFAIALGIFVTHVPE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLEFLGIPASVRGAAFSTYGILAALVMISPLPSRFLRRAGLQASAAGLSLISIGLLVASA
HHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VRSVSPASLEQLTLIGAAIFGIGFGLLFPTVTAEAARRSPPGMRGRAFGVFYALYSLGVV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LGALASGWLTEFVGRASGWPLVAGAAVAALGCVVPFLERRTREEVAL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]