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The map label for this gene is rplY

Identifier: 221633140

GI number: 221633140

Start: 1143462

End: 1144133

Strand: Reverse

Name: rplY

Synonym: trd_1156

Alternate gene names: 221633140

Gene position: 1144133-1143462 (Counterclockwise)

Preceding gene: 221633141

Following gene: 221633137

Centisome position: 57.12

GC content: 63.69

Gene sequence:

>672_bases
ATGACTGAGCACCCAGTAGTGAACGGCGAACGTCGAACGGTTTTCGGGAAAAAGGTCAAGCGCCTGCGCCGGCTCGGCAG
GACACCGGGTGTCATTGCGGGACCGGTCGTTCCTGAGCCGATTCCGGTCGCGGTGGATGAGCGTGAGTTCGAGCGGGCAT
TCCATCACGTCGGGACCGCGCGGCTTGTTGATCTCGTCGTCGACGGGACGACGTATCCGGTGTTCATTCGTGAGGTCGCG
CTGCATCCGGTCACCCGCGAAATTCTGAACGTGGAGTTCTATGCTCCTGACCTGGCTCGACCCGTGACGGTCACGGTGCC
GGTCCTGACCGTCGGCGAATTGGCGCCGGATGTGGTCGGTGTCGTTACGATCCAGACGCCAGAGCTCGAGATCCGGGCGC
TGCCGGATGCCGTTCCGGAACACATCGAGGTCGACTTGAGCTTGCTCTCCACCGAGCGCACGGTTATTCATGCTGGTGAG
ATCCCGTTGCCAGTCGGTGTCGAACTCGAGACCGATCCGGACGTGGTCGTCGTCGTGGTCGAGGAGGCAGAAGAAGCCGA
GGCGGCAGAGGAAGCGACCCGCGTCCTCGCAGAAGAGATCGGCGACCGGCCGCGCTCGGCGGAGGAGGGTGCCGCTCCGG
TGAAAGAGCGGAAGTTGCGCGAGAGCGAGTGA

Upstream 100 bases:

>100_bases
TGAGAGGCCACTGATTTGGCGAGGGCTGGGGTTTCGTGTAGGCTAGCATGCTGGTGTACATGGTGCAGGGTGGGAAGGTG
AAGAGACGGAGCTGGCGACC

Downstream 100 bases:

>100_bases
ACGCCCGGGCTCGCTTGAGATTCGCGTTCGTCAGCGGGCCACGGAGCGGGCCACCCGTGCCACGATCACGGTCAGGAGCC
CGAGCAGCGGGAAGGCGAGC

Product: 50S ribosomal protein L25, Ctc-form

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTEHPVVNGERRTVFGKKVKRLRRLGRTPGVIAGPVVPEPIPVAVDEREFERAFHHVGTARLVDLVVDGTTYPVFIREVA
LHPVTREILNVEFYAPDLARPVTVTVPVLTVGELAPDVVGVVTIQTPELEIRALPDAVPEHIEVDLSLLSTERTVIHAGE
IPLPVGVELETDPDVVVVVVEEAEEAEAAEEATRVLAEEIGDRPRSAEEGAAPVKERKLRESE

Sequences:

>Translated_223_residues
MTEHPVVNGERRTVFGKKVKRLRRLGRTPGVIAGPVVPEPIPVAVDEREFERAFHHVGTARLVDLVVDGTTYPVFIREVA
LHPVTREILNVEFYAPDLARPVTVTVPVLTVGELAPDVVGVVTIQTPELEIRALPDAVPEHIEVDLSLLSTERTVIHAGE
IPLPVGVELETDPDVVVVVVEEAEEAEAAEEATRVLAEEIGDRPRSAEEGAAPVKERKLRESE
>Mature_222_residues
TEHPVVNGERRTVFGKKVKRLRRLGRTPGVIAGPVVPEPIPVAVDEREFERAFHHVGTARLVDLVVDGTTYPVFIREVAL
HPVTREILNVEFYAPDLARPVTVTVPVLTVGELAPDVVGVVTIQTPELEIRALPDAVPEHIEVDLSLLSTERTVIHAGEI
PLPVGVELETDPDVVVVVVEEAEEAEAAEEATRVLAEEIGDRPRSAEEGAAPVKERKLRESE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_THERP (B9L0T5)

Other databases:

- EMBL:   CP001275
- RefSeq:   YP_002522365.1
- GeneID:   7355623
- GenomeReviews:   CP001275_GR
- KEGG:   tro:trd_1156
- OMA:   HIDQNVL
- ProtClustDB:   CLSK2807867
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 24388; Mature: 24257

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEHPVVNGERRTVFGKKVKRLRRLGRTPGVIAGPVVPEPIPVAVDEREFERAFHHVGTA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECHHHHHHHHHHCCHH
RLVDLVVDGTTYPVFIREVALHPVTREILNVEFYAPDLARPVTVTVPVLTVGELAPDVVG
HEEHEEECCCCCHHHHHHHHHCHHHHHHHEEEEECCCCCCCEEEEEEEEEHHHHCCCEEE
VVTIQTPELEIRALPDAVPEHIEVDLSLLSTERTVIHAGEIPLPVGVELETDPDVVVVVV
EEEEECCCEEEEECCCCCCCHHEEEEEEECCCCEEEEECCCCCCCCEEECCCCCEEEEEE
EEAEEAEAAEEATRVLAEEIGDRPRSAEEGAAPVKERKLRESE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
TEHPVVNGERRTVFGKKVKRLRRLGRTPGVIAGPVVPEPIPVAVDEREFERAFHHVGTA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECHHHHHHHHHHCCHH
RLVDLVVDGTTYPVFIREVALHPVTREILNVEFYAPDLARPVTVTVPVLTVGELAPDVVG
HEEHEEECCCCCHHHHHHHHHCHHHHHHHEEEEECCCCCCCEEEEEEEEEHHHHCCCEEE
VVTIQTPELEIRALPDAVPEHIEVDLSLLSTERTVIHAGEIPLPVGVELETDPDVVVVVV
EEEEECCCEEEEECCCCCCCHHEEEEEEECCCCEEEEECCCCCCCCEEECCCCCEEEEEE
EEAEEAEAAEEATRVLAEEIGDRPRSAEEGAAPVKERKLRESE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA