| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633122
Identifier: 221633122
GI number: 221633122
Start: 1123403
End: 1124854
Strand: Reverse
Name: 221633122
Synonym: trd_1138
Alternate gene names: NA
Gene position: 1124854-1123403 (Counterclockwise)
Preceding gene: 221633130
Following gene: 221633121
Centisome position: 56.16
GC content: 62.05
Gene sequence:
>1452_bases GTGATGAGAGGTGAACCACGTGGTCACCGGCTCGGTTCGAAACTGACGCGGCGGGGACTGCTCCGAGGGTTGGCAGTCGG TGCCGCGGTGCCCGCAGTGAGCGCGTTGCTGGCGGCCTGTGCGGGTGGACAGGCCACGCCGACACCGGCCCCGCAACCGA CACCGACGGCTGCTCCAGCGGCACAACCGACTCCGACTGCTGCGGCTGCGTCACCGACGCCGGCTGCGCCACCGACGCCG ACTCCGGTCGTGCTGAAGGGGACGAAGTTGAACATTCTCTTCGGCACCTTCTTCGTTCCCGAGACCCAGGATCTCATGAA GCAACAGCTCCAGGAGTTCGGGAAGGAAACCGGCGTCGAGGCGACGATCGACTTCATCAACTGGCCGGATCTCCAGCCCA AGATCAGCGCGGCCGTGCAGGCAGGGGCTGGTCCGGACATCGTCGGAATGTGGGATACCTGGCCCTCGCTCTATAAGGAC GCACTGGTCGATGTCGCCGAAATCGTCGAAAAGCGGATCAAGGGGGAGGGGGACTACTTCGACTGGGTCAAGAAGACCGT GATGGTCGGCGATCAGTGGCTGAGCATTCCGATTGGTGCCCCGACGAGCGCACAGGTCTACCGGAAGAGCCTCCTGGAGA AGGCCGGTTGGCCCGATCCGAACAACCCGCCGGACACCTGGGAAGATCTCTTCAAGATCGGCGTGGAGTTCAAGAAGTTG GGTATGCCGCTCGGACAGGCTTTCGGCCACTCCACTGGTGACCCGCCGTCCTTCTGCTATGCCTTCATGTGGGCCTACGG GGCGATGGAGGTCGAAGCGGACGGGAAGACGGTCGCGTTCAACAAGCCGCAGTTCGTCGAGGGGATGAAGCTCTTCCTGA GCTATTGGAAGCCAGCGTTCGACGAAACCGGATTGTCCTGGGACGATGCGACCAACAACCGGGCTTTCCTGGCGGGCCAG ATCGGCTGGACCTTCAACGGGAGCAGCATTTACATCGCGGCCAAGAAACAGGCGCCCGACATCGCGGAGGACATCATCCA CCATATCTATCCGAAGGGACCAGCCGGCCGATTCAACAATTTGGGGAGCTGGTCGGTCGGGATCCTCAAGTACTCGAAGA ACGTTGCCGGTGCCAAGGCGTTCCTCGAGTGGTGGACGGCGCCCGAGCAGTTCCGCAAGTGGCTGGAGATCCAGCAGGGA TACCAGGTCGCGCCGACCCAATACTATCTCGATGACCCGTATTACAAGGCTGACCCGAAGCTGGTGCCGTATGTGGAAGC GGCCAAGTACGGTCGCAACAAAGGCTACGCCGGGCTGGGCAACGAGAAAGCAGCCGAGGCATTCGCGCGGTATGTCGTGG TCGATACGTTCGCCCGCGCGATCCAATCCGGCAATGCCGAGGAAGCGATCCAGTGGGGCGCCAGCGAATTGGAGAAGATT TACAGTCGATGA
Upstream 100 bases:
>100_bases CTTCTCCGATCGTCCGGAATATCGGACAACGGATGAAACGACGAACGACCGAGCGTACGGCAGTGTGGGTGGGTCGCTAG TGAAGCGAGGAGGAGGTCCA
Downstream 100 bases:
>100_bases GCGAGTCCGGGCTGGGGCAGTCGGTATACTGCCCCAGCCCGGCTGATGCACCGCAACGAGCATGACGATCGGAGTCACGC CATGACGACTGCGCCAGCCA
Product: putative sugar uptake ABC transporter periplasmic solute-binding protein
Products: NA
Alternate protein names: Sugar ABC Transporter; Sugar ABC Transporter Periplasmic Component; Sugar ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MMRGEPRGHRLGSKLTRRGLLRGLAVGAAVPAVSALLAACAGGQATPTPAPQPTPTAAPAAQPTPTAAAASPTPAAPPTP TPVVLKGTKLNILFGTFFVPETQDLMKQQLQEFGKETGVEATIDFINWPDLQPKISAAVQAGAGPDIVGMWDTWPSLYKD ALVDVAEIVEKRIKGEGDYFDWVKKTVMVGDQWLSIPIGAPTSAQVYRKSLLEKAGWPDPNNPPDTWEDLFKIGVEFKKL GMPLGQAFGHSTGDPPSFCYAFMWAYGAMEVEADGKTVAFNKPQFVEGMKLFLSYWKPAFDETGLSWDDATNNRAFLAGQ IGWTFNGSSIYIAAKKQAPDIAEDIIHHIYPKGPAGRFNNLGSWSVGILKYSKNVAGAKAFLEWWTAPEQFRKWLEIQQG YQVAPTQYYLDDPYYKADPKLVPYVEAAKYGRNKGYAGLGNEKAAEAFARYVVVDTFARAIQSGNAEEAIQWGASELEKI YSR
Sequences:
>Translated_483_residues MMRGEPRGHRLGSKLTRRGLLRGLAVGAAVPAVSALLAACAGGQATPTPAPQPTPTAAPAAQPTPTAAAASPTPAAPPTP TPVVLKGTKLNILFGTFFVPETQDLMKQQLQEFGKETGVEATIDFINWPDLQPKISAAVQAGAGPDIVGMWDTWPSLYKD ALVDVAEIVEKRIKGEGDYFDWVKKTVMVGDQWLSIPIGAPTSAQVYRKSLLEKAGWPDPNNPPDTWEDLFKIGVEFKKL GMPLGQAFGHSTGDPPSFCYAFMWAYGAMEVEADGKTVAFNKPQFVEGMKLFLSYWKPAFDETGLSWDDATNNRAFLAGQ IGWTFNGSSIYIAAKKQAPDIAEDIIHHIYPKGPAGRFNNLGSWSVGILKYSKNVAGAKAFLEWWTAPEQFRKWLEIQQG YQVAPTQYYLDDPYYKADPKLVPYVEAAKYGRNKGYAGLGNEKAAEAFARYVVVDTFARAIQSGNAEEAIQWGASELEKI YSR >Mature_483_residues MMRGEPRGHRLGSKLTRRGLLRGLAVGAAVPAVSALLAACAGGQATPTPAPQPTPTAAPAAQPTPTAAAASPTPAAPPTP TPVVLKGTKLNILFGTFFVPETQDLMKQQLQEFGKETGVEATIDFINWPDLQPKISAAVQAGAGPDIVGMWDTWPSLYKD ALVDVAEIVEKRIKGEGDYFDWVKKTVMVGDQWLSIPIGAPTSAQVYRKSLLEKAGWPDPNNPPDTWEDLFKIGVEFKKL GMPLGQAFGHSTGDPPSFCYAFMWAYGAMEVEADGKTVAFNKPQFVEGMKLFLSYWKPAFDETGLSWDDATNNRAFLAGQ IGWTFNGSSIYIAAKKQAPDIAEDIIHHIYPKGPAGRFNNLGSWSVGILKYSKNVAGAKAFLEWWTAPEQFRKWLEIQQG YQVAPTQYYLDDPYYKADPKLVPYVEAAKYGRNKGYAGLGNEKAAEAFARYVVVDTFARAIQSGNAEEAIQWGASELEKI YSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52723; Mature: 52723
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRGEPRGHRLGSKLTRRGLLRGLAVGAAVPAVSALLAACAGGQATPTPAPQPTPTAAPA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC AQPTPTAAAASPTPAAPPTPTPVVLKGTKLNILFGTFFVPETQDLMKQQLQEFGKETGVE CCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCE ATIDFINWPDLQPKISAAVQAGAGPDIVGMWDTWPSLYKDALVDVAEIVEKRIKGEGDYF EEEEECCCCCCCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH DWVKKTVMVGDQWLSIPIGAPTSAQVYRKSLLEKAGWPDPNNPPDTWEDLFKIGVEFKKL HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH GMPLGQAFGHSTGDPPSFCYAFMWAYGAMEVEADGKTVAFNKPQFVEGMKLFLSYWKPAF CCCHHHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHCCHH DETGLSWDDATNNRAFLAGQIGWTFNGSSIYIAAKKQAPDIAEDIIHHIYPKGPAGRFNN CCCCCCCCCCCCCCEEEEEECCEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC LGSWSVGILKYSKNVAGAKAFLEWWTAPEQFRKWLEIQQGYQVAPTQYYLDDPYYKADPK CCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEECCCCCCCCCC LVPYVEAAKYGRNKGYAGLGNEKAAEAFARYVVVDTFARAIQSGNAEEAIQWGASELEKI CCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHH YSR HCC >Mature Secondary Structure MMRGEPRGHRLGSKLTRRGLLRGLAVGAAVPAVSALLAACAGGQATPTPAPQPTPTAAPA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC AQPTPTAAAASPTPAAPPTPTPVVLKGTKLNILFGTFFVPETQDLMKQQLQEFGKETGVE CCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCE ATIDFINWPDLQPKISAAVQAGAGPDIVGMWDTWPSLYKDALVDVAEIVEKRIKGEGDYF EEEEECCCCCCCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH DWVKKTVMVGDQWLSIPIGAPTSAQVYRKSLLEKAGWPDPNNPPDTWEDLFKIGVEFKKL HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH GMPLGQAFGHSTGDPPSFCYAFMWAYGAMEVEADGKTVAFNKPQFVEGMKLFLSYWKPAF CCCHHHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHCCHH DETGLSWDDATNNRAFLAGQIGWTFNGSSIYIAAKKQAPDIAEDIIHHIYPKGPAGRFNN CCCCCCCCCCCCCCEEEEEECCEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC LGSWSVGILKYSKNVAGAKAFLEWWTAPEQFRKWLEIQQGYQVAPTQYYLDDPYYKADPK CCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEECCCCCCCCCC LVPYVEAAKYGRNKGYAGLGNEKAAEAFARYVVVDTFARAIQSGNAEEAIQWGASELEKI CCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHH YSR HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA