Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

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The map label for this gene is 221632781

Identifier: 221632781

GI number: 221632781

Start: 762471

End: 762863

Strand: Reverse

Name: 221632781

Synonym: trd_0774

Alternate gene names: NA

Gene position: 762863-762471 (Counterclockwise)

Preceding gene: 221632782

Following gene: 221632780

Centisome position: 38.09

GC content: 62.85

Gene sequence:

>393_bases
TTGATCCCGTTTCTCGTCGAGGAGGTCGTGACGATGAGCGAGCGTCCCGACCAGCGCAAGCGCCGCGGACCGCGGCTCAA
GCATTTGCCTGTCCGCACCTGCGTCGCTTGCCGCGCTCGAGATCTCAAGCGAACATTTGTCCGTATCGTGCGGACCCCGG
AAGGGACGCTCGCCATCGATCCGACCGGAAAGCGGAGCGGGCGCGGCGCGTATCTTTGCCGACGGTTTAGTTGTTGGGAG
CGAGCAGCAAATACCGACGTCCTCGAACGTGCTCTCCGCATACCCGTCCCACAGGAGTTTCGTGACGAACTCCTTCGTTG
GGCCGATCTGCACATCCGCCGTGACGACCCGCCCGCACCTGAGACAACACCCGAACAGGAGGACCAGCTATGA

Upstream 100 bases:

>100_bases
GCGTCGTCAATGTCTATTACGATCGCGAACTTCGTGCTCGGTACGATTTCGAAACCGGTCGTGAGCTACCATTGACCGAT
GACGAAACGGCGAATGTCCG

Downstream 100 bases:

>100_bases
GCACCAAAGCGAAAAAGCACGCACCGGTACAAAACAATCGGTCGCCGATGACTGCACAGCGGAGCTCGCCTGCTGCGAGT
GTCGCCCGCGGCCCTGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAIDPTGKRSGRGAYLCRRFSCWE
RAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAPETTPEQEDQL

Sequences:

>Translated_130_residues
MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAIDPTGKRSGRGAYLCRRFSCWE
RAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAPETTPEQEDQL
>Mature_130_residues
MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAIDPTGKRSGRGAYLCRRFSCWE
RAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAPETTPEQEDQL

Specific function: Unknown

COG id: COG2740

COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15201; Mature: 15201

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAID
CCHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
PTGKRSGRGAYLCRRFSCWERAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAP
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCCC
ETTPEQEDQL
CCCCCCCCCC
>Mature Secondary Structure
MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAID
CCHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
PTGKRSGRGAYLCRRFSCWERAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAP
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCCC
ETTPEQEDQL
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA