| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632670
Identifier: 221632670
GI number: 221632670
Start: 648819
End: 649766
Strand: Reverse
Name: 221632670
Synonym: trd_0653
Alternate gene names: NA
Gene position: 649766-648819 (Counterclockwise)
Preceding gene: 221632671
Following gene: 221632669
Centisome position: 32.44
GC content: 63.5
Gene sequence:
>948_bases ATGAGTTTGCTTTGGGCACTTCGTATCGGCGCACTTCTCACGCTCATCGTTCCAGCACGACTCGGCTATTGGCTTTGTCG TGTCATCGGCATCGCTGTCTTCCTCTTCCACCCTCGCGCACGACGTGCGGTCTTGGATAACCTTCGCCACGTTTGCCCTC GCTGCTCTCGTCTCTGGCGAACGCACCAAGCCGCGCGAGTCTTCATCACGGCAGTGATGAACTACTACGATCTCGTCCGT ATCCGCACGGTGGATCGTCACCGCTTGCGAGAACTCATCGAGGTGCGCGGTTGGAACCACGTCGAAGCAGCGCTGGCTCG ACAGCAGGGCGTGATCGTCCTCTCAGCTCATCTCGGTAATTTCAACGTCGTTGCTCAGTATCCGGCCGAACTCGGCCTGG AAGCCGCGATCGTCGTCGAGCGCGTGCAGCCACCCTCACTCTTCGCCTATCTCTGCCGCTTACGAAGCGCCACAGGCGTT CGCGTACTGCCATCCGGACCGGAAGCTGTGCCAGCGATCCTTCGGCTACTGCGTCGGAACGGGATTCTCCTCGTCGCGGG CGACCGCGACGTGACGGGGCACAGTCGTCTCGTTCGCTTCTTCGATGCACCAGCCCGGTTACCGATCGGTCCCATCATGC TCGCGCGACGCACCGGAGCCACGCTTCTACCCGCCTACACGATTCGCCTCTCCCCTCGCCGATCGTTGGTCGTCGTCGAC CGACCATTGGATCTCGTCCACACGGATGATCAGGAACACGACCTGCTGGCCAACCTCGAGCTGGTCGCCCGCGCGCTGGA GCGGATGATCCGCACTGACCCCGGCCAGTGGGCCGTGCTCCAGCCGGTGTGGGCGGACGCGTCCCCACGGACTCCACTCG CTGAGGCACTCGGGACTGTGCCGGCGAGCGCTCCCGGAGGCACAACCCTCCAGGCCACCAGCGACTAG
Upstream 100 bases:
>100_bases TCGAGCGCGTCATCCGCGACTACACCGATCAATGGTGGTGCTGGCGACCGTGGTGGCCCGTACCCGCTGAGAAAGCGCTA CCCGAGCTGCAGGGGGAACG
Downstream 100 bases:
>100_bases CCGACCTGACGTTCGCACAACGAGTGAGCATCTACACTCGTTTCTCACAGTCAAATGCTCAGCGCGGGCGGACGCCTGGA CCTATCAGGAAGTAGGGTTA
Product: putative lipid A biosynthesis lauroyl acyltransferase
Products: NA
Alternate protein names: PIM acyltransferase [H]
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MSLLWALRIGALLTLIVPARLGYWLCRVIGIAVFLFHPRARRAVLDNLRHVCPRCSRLWRTHQAARVFITAVMNYYDLVR IRTVDRHRLRELIEVRGWNHVEAALARQQGVIVLSAHLGNFNVVAQYPAELGLEAAIVVERVQPPSLFAYLCRLRSATGV RVLPSGPEAVPAILRLLRRNGILLVAGDRDVTGHSRLVRFFDAPARLPIGPIMLARRTGATLLPAYTIRLSPRRSLVVVD RPLDLVHTDDQEHDLLANLELVARALERMIRTDPGQWAVLQPVWADASPRTPLAEALGTVPASAPGGTTLQATSD
Sequences:
>Translated_315_residues MSLLWALRIGALLTLIVPARLGYWLCRVIGIAVFLFHPRARRAVLDNLRHVCPRCSRLWRTHQAARVFITAVMNYYDLVR IRTVDRHRLRELIEVRGWNHVEAALARQQGVIVLSAHLGNFNVVAQYPAELGLEAAIVVERVQPPSLFAYLCRLRSATGV RVLPSGPEAVPAILRLLRRNGILLVAGDRDVTGHSRLVRFFDAPARLPIGPIMLARRTGATLLPAYTIRLSPRRSLVVVD RPLDLVHTDDQEHDLLANLELVARALERMIRTDPGQWAVLQPVWADASPRTPLAEALGTVPASAPGGTTLQATSD >Mature_314_residues SLLWALRIGALLTLIVPARLGYWLCRVIGIAVFLFHPRARRAVLDNLRHVCPRCSRLWRTHQAARVFITAVMNYYDLVRI RTVDRHRLRELIEVRGWNHVEAALARQQGVIVLSAHLGNFNVVAQYPAELGLEAAIVVERVQPPSLFAYLCRLRSATGVR VLPSGPEAVPAILRLLRRNGILLVAGDRDVTGHSRLVRFFDAPARLPIGPIMLARRTGATLLPAYTIRLSPRRSLVVVDR PLDLVHTDDQEHDLLANLELVARALERMIRTDPGQWAVLQPVWADASPRTPLAEALGTVPASAPGGTTLQATSD
Specific function: Catalyzes the acylation to the position 6 of the alpha- 1,2-linked mannose residue of the phosphatidyl-myo-inositol dimannoside (PIM2) or monomannoside (PIM1) [H]
COG id: COG1560
COG function: function code M; Lauroyl/myristoyl acyltransferase
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the htrB/msbB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004960 [H]
Pfam domain/function: PF03279 Lip_A_acyltrans [H]
EC number: NA
Molecular weight: Translated: 35010; Mature: 34878
Theoretical pI: Translated: 11.46; Mature: 11.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLWALRIGALLTLIVPARLGYWLCRVIGIAVFLFHPRARRAVLDNLRHVCPRCSRLWR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH THQAARVFITAVMNYYDLVRIRTVDRHRLRELIEVRGWNHVEAALARQQGVIVLSAHLGN HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCC FNVVAQYPAELGLEAAIVVERVQPPSLFAYLCRLRSATGVRVLPSGPEAVPAILRLLRRN EEEEEECCHHHCCCEEEHEECCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC GILLVAGDRDVTGHSRLVRFFDAPARLPIGPIMLARRTGATLLPAYTIRLSPRRSLVVVD CEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHEECCCCCEEEEEEEEEECCCCCEEEEE RPLDLVHTDDQEHDLLANLELVARALERMIRTDPGQWAVLQPVWADASPRTPLAEALGTV CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCC PASAPGGTTLQATSD CCCCCCCCEEEECCC >Mature Secondary Structure SLLWALRIGALLTLIVPARLGYWLCRVIGIAVFLFHPRARRAVLDNLRHVCPRCSRLWR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH THQAARVFITAVMNYYDLVRIRTVDRHRLRELIEVRGWNHVEAALARQQGVIVLSAHLGN HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCC FNVVAQYPAELGLEAAIVVERVQPPSLFAYLCRLRSATGVRVLPSGPEAVPAILRLLRRN EEEEEECCHHHCCCEEEHEECCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC GILLVAGDRDVTGHSRLVRFFDAPARLPIGPIMLARRTGATLLPAYTIRLSPRRSLVVVD CEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHEECCCCCEEEEEEEEEECCCCCEEEEE RPLDLVHTDDQEHDLLANLELVARALERMIRTDPGQWAVLQPVWADASPRTPLAEALGTV CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCC PASAPGGTTLQATSD CCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA