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The map label for this gene is rutD [H]

Identifier: 221632585

GI number: 221632585

Start: 553862

End: 554698

Strand: Reverse

Name: rutD [H]

Synonym: trd_0560

Alternate gene names: 221632585

Gene position: 554698-553862 (Counterclockwise)

Preceding gene: 221632586

Following gene: 221632584

Centisome position: 27.69

GC content: 64.4

Gene sequence:

>837_bases
ATGAGCGTCACCGAACTGGCGTGGGCAACTACACCGAACGGCACCAAAATCGCGTACGAGCGGCGGGTCGGATCGGCCGG
CCCGCCGATCCTCGCCCTTCACGGCGTGCTCGTCGGCACGTCAAACTGGGTTCACCAAGTGCTTCGGCTTCCACAGTTCC
AGTGGTTGCTTCCCCATCTGCGTGGGCATGGGAACAGCCCGCCACCCATGCCGCATCAGACCATCGAAGAAGCCGCCCTC
GACGTGGAGTCCGTCTTGCTCGCTGAACGGATCGATCGTGCGGTCGTCCTGGGCAACTCCCTGGGTGCGACCATCGCGCT
CGCCCTGGCCCTGATGCGTCCCCACCGCATTCATGGGCTGGTCCTCGTTGAACCTTCTCTTCCAGCACTCGCCGGAGAAG
AAGAGCGTGAGCGGCTCCGGCACTCGGCTGCCCTGGTTCGCGAACTCTTGGCAGCAGGCCGGATCGACGAAGCCTTGGCC
CATTTCCTCGGGCCCCGCCTCGGACCGAATTGGGCAGAGAAGGCCGGTCAGCGCCGACTCGAGGAGTGGCGGCGCAATAT
TTTTAGTACGCCAGCCTGGATCGACGCCGTTCTCGCCTTCGACCCCGGTCCGGTTCCGCTCGCCGCGATCGATTGCCCCA
CGCTCCTCGTCTATGGCGCCGAGACCCAGCCAGGCTATCGCCGGACGATCTTCGCCCTCGCTGACTTGCTTCCTCACGCG
CAGATCGCTGAGGTTCCTCGCGCCGGACATGGTGCGCCTGTCGATAACCCCGATGCCTTCAACGAGCTCCTTCTCGGTTT
CCTTTCCGCGATCGAGTGGCTACCTTCTCCAGGCTGA

Upstream 100 bases:

>100_bases
ACCATCGGATCGTGGACGGTCGGGAAGCTGTGCTTTTCCTCGTCCGCGTGAAAGAACTCATCGAGGACCCAGAACGCCTG
CTGCTCGAAGGCTGAACGCG

Downstream 100 bases:

>100_bases
CGAACGAGCCCTCCCCGACAACGAGCGAACCCGTGCAAGCGGCGACGGTACCAGCGGGCACCAAAAACGATGGAACGAAT
AACCTGCTCCGTGCATTAGA

Product: alpha/beta fold family hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSVTELAWATTPNGTKIAYERRVGSAGPPILALHGVLVGTSNWVHQVLRLPQFQWLLPHLRGHGNSPPPMPHQTIEEAAL
DVESVLLAERIDRAVVLGNSLGATIALALALMRPHRIHGLVLVEPSLPALAGEEERERLRHSAALVRELLAAGRIDEALA
HFLGPRLGPNWAEKAGQRRLEEWRRNIFSTPAWIDAVLAFDPGPVPLAAIDCPTLLVYGAETQPGYRRTIFALADLLPHA
QIAEVPRAGHGAPVDNPDAFNELLLGFLSAIEWLPSPG

Sequences:

>Translated_278_residues
MSVTELAWATTPNGTKIAYERRVGSAGPPILALHGVLVGTSNWVHQVLRLPQFQWLLPHLRGHGNSPPPMPHQTIEEAAL
DVESVLLAERIDRAVVLGNSLGATIALALALMRPHRIHGLVLVEPSLPALAGEEERERLRHSAALVRELLAAGRIDEALA
HFLGPRLGPNWAEKAGQRRLEEWRRNIFSTPAWIDAVLAFDPGPVPLAAIDCPTLLVYGAETQPGYRRTIFALADLLPHA
QIAEVPRAGHGAPVDNPDAFNELLLGFLSAIEWLPSPG
>Mature_277_residues
SVTELAWATTPNGTKIAYERRVGSAGPPILALHGVLVGTSNWVHQVLRLPQFQWLLPHLRGHGNSPPPMPHQTIEEAALD
VESVLLAERIDRAVVLGNSLGATIALALALMRPHRIHGLVLVEPSLPALAGEEERERLRHSAALVRELLAAGRIDEALAH
FLGPRLGPNWAEKAGQRRLEEWRRNIFSTPAWIDAVLAFDPGPVPLAAIDCPTLLVYGAETQPGYRRTIFALADLLPHAQ
IAEVPRAGHGAPVDNPDAFNELLLGFLSAIEWLPSPG

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 30186; Mature: 30055

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTELAWATTPNGTKIAYERRVGSAGPPILALHGVLVGTSNWVHQVLRLPQFQWLLPHL
CCCCCCEEEECCCCCEEEEECCCCCCCCCCEEHHHHHHCCCHHHHHHHHCCCHHHHHHHH
RGHGNSPPPMPHQTIEEAALDVESVLLAERIDRAVVLGNSLGATIALALALMRPHRIHGL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCHHHCEE
VLVEPSLPALAGEEERERLRHSAALVRELLAAGRIDEALAHFLGPRLGPNWAEKAGQRRL
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
EEWRRNIFSTPAWIDAVLAFDPGPVPLAAIDCPTLLVYGAETQPGYRRTIFALADLLPHA
HHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHCCCH
QIAEVPRAGHGAPVDNPDAFNELLLGFLSAIEWLPSPG
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVTELAWATTPNGTKIAYERRVGSAGPPILALHGVLVGTSNWVHQVLRLPQFQWLLPHL
CCCCCEEEECCCCCEEEEECCCCCCCCCCEEHHHHHHCCCHHHHHHHHCCCHHHHHHHH
RGHGNSPPPMPHQTIEEAALDVESVLLAERIDRAVVLGNSLGATIALALALMRPHRIHGL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCHHHCEE
VLVEPSLPALAGEEERERLRHSAALVRELLAAGRIDEALAHFLGPRLGPNWAEKAGQRRL
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
EEWRRNIFSTPAWIDAVLAFDPGPVPLAAIDCPTLLVYGAETQPGYRRTIFALADLLPHA
HHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHCCCH
QIAEVPRAGHGAPVDNPDAFNELLLGFLSAIEWLPSPG
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA