| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is mmpL3 [H]
Identifier: 221632398
GI number: 221632398
Start: 372950
End: 375160
Strand: Reverse
Name: mmpL3 [H]
Synonym: trd_0370
Alternate gene names: 221632398
Gene position: 375160-372950 (Counterclockwise)
Preceding gene: 221632399
Following gene: 221632397
Centisome position: 18.73
GC content: 61.78
Gene sequence:
>2211_bases ATGGTGTTCGAGCGCATCGGTCGATTTTCCTTTCGCTACCGCTGGTTCGTGCTCGCACTCTGGCTCGTCGTTGTTCTGGC AGTTCTTCCCACCTTACCCCGCGCGACTGGTCGACTCGAAGTCGGTGGTTTTTCCAGCCCACACACGGAAGCTGCCCGGA CGCGCGAACTCCTGCGCGAGCGGATTCCTGGCTACAGTCCGAGTTCGCTGCTCGTCCTCTTCTCGCATCCGACGCTGTCT CCCTCCGATCCCGCCTTCGTCGAGCAAGCTCAGCGCGCCCTGAGCGCTGTTCCCTCGATTCCCCATGTGACTGGCATTCG CTGGTTCACCGAAAACCCGAGCCAAATCGCGCCGGATGGTTCACTCGCCTACGCGGTCATCGAATTGGACTTGCAACCGG AAGAAGCACAGCGGGTCCTCGACGAGATTCAAGAAGCGATCATCCGAACCGATCTCCAGGTCCAACTGGCAGGCGCTCCC GCCTTCTATGCAGACCTGGAGCGCGTGACCGAGCGGGATCTTCGGCGGGCTGAGTTGATCGCTTTTCCGTTCGCGTTAGC CGCCTTGCTCTTCGTCTTCGGTAGCGCTGTCGCTGCTGCGGTTCCCCTCTTCATCGGTGGCGTGACGGTGGCGCTGGTTC TCGGTATCGTCTACGGACTGACGCACCTGACGGAACTCTCGATCTTCACGCTCAACGTTGCCTCCCTTCTCGGCCTGGGC CTCTCGATCGATTACTCCCTGTTTCTCGTCAGTCGCTTCCGCGAGGAACTTGCCTCGCACGATCTCGCGGATGCAGTGGC CCGCACGACGGCGACTGCCGGGCGAGCGGTCTTCTTCTCCGGGCTGACGGTATTGATCGGACTCTCCGGCCTCGGCTTTT TCGAATTCCTCTTCATGCGCTCCGTCGGCATCGCTGGCATGCTCGTGGTGCTGGTTGCCGTCAGTGCCAGCTTGACGCTC CTGCCCGCTGTCCTCGGCATCCTGGGGCGCCGGATCGATGCACTCCGCGTCATTCGCCGCGATACCGAGACGGGACGCTT CTGGCACTGGATCACCGAGTTCGTCATGCAGCGCCCCTGGCAAGTCGCCCTACCGGTCGTTGCCCTGCTGGTTCTCCTCG GACTTCCCTTCCGCCACGTCGAACTCAGCTCGCCCGATGCGACCATCCTGCCCACTTCGACTCCCTCCCGCCAGGCATTG GAGACCTTTCGCCGCGCGTTCGGCGATGGGGAACTCTCACCGATCGTCATCGCGGTCGAAACCGAGCGTCCTGTCAACGA TCCCCAGACACTAGCTGCCCTCTACGACTTCACTCGCCGGCTCGCGGCGGATCCGCGGGTGACCAAGGTCACCAGCATCG TGACCATCGACCCGCGCATCAGTCTCGCCCAATACCAGCTTCTGTACGCTGATCCGGAGCGGATTCCCGAGCCACTGCTG CAGCGCGTGTACCGGGAGCTTGCTGGGGATCATCTCACGGCAATTTACGTGTACACCGACGCACTGCCAGCCAGTGATCG CGCGAAGGCTCTCCTGCATGACATCCGCGCGATGGATCCCGGTCCAGGGTTGAAGCTCTGGGTCGATGGCGGCACAGCGG AAATCGTCGATGTCGTCGATCGAATGTACAGTGAGTTTCCCTTGGCTGCCTCGACGGTCATTCTGGCGACCTACATCGTG CTCTTCCTTCTCCTCCGCTCGGTCTTTCTCCCGCTCAAGGCGATCATTCTCAACGTGTTGAGCCTTACCGCGAGTTACGG TGCACTCGTTTTCGTGTTCCAGGAGGGACACTTCAGCTCGCTGTTGCGTTTCTCGCCGCTCGGATTTACCGAGGCATCCT TACCGATCGTGATGTTTTGCATCCTCTTCGGCGTTTCCATGGACTATGAAGTATTCTTGCTGAGCCGGATGCGGGAATCC TGGGACCAGACTCAGGACAACCGCTTAGCCGTCGCCACGGGGCTCGCCCGCAGCGGTCGCATCATCACGGGTGCTGCTCT CATCCTAGTCGTCGTCGCGGCCGCCTTCGTGACCGCCGATGTCGTCTTGATCAAAGCGCTCGGATTGGGTATCGCGCTCG CGATCGCGCTGGATGCCAGCATCGTACGCACGCTGCTCGTCCCCGCCACGATGCGCCTACTCGGCCAATGGAACTGGTGG GTTCCGCGCCGCCTCGCGCGGACTCTCGACACGGTACGGATCGGACACTGA
Upstream 100 bases:
>100_bases CCGCACCGCCTCATCGCCCCTTCTTGACCGAGCTGCTTCCCCAGACGGGGCTTTGGTACAACTCATCCGGCGCGGGCTGC ATCCGTCGCCAGGAGGGACA
Downstream 100 bases:
>100_bases ATGCGCCGACGAGCATTTCTCGGCACCCTCGCACTCGGGCTGCTCGCCTGCCGAAGCTCCAATGGGCCGCAGTCACAGGA GCCGATGGGGCCGACCCCAT
Product: putative membrane protein mmpL3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 736
Protein sequence:
>736_residues MVFERIGRFSFRYRWFVLALWLVVVLAVLPTLPRATGRLEVGGFSSPHTEAARTRELLRERIPGYSPSSLLVLFSHPTLS PSDPAFVEQAQRALSAVPSIPHVTGIRWFTENPSQIAPDGSLAYAVIELDLQPEEAQRVLDEIQEAIIRTDLQVQLAGAP AFYADLERVTERDLRRAELIAFPFALAALLFVFGSAVAAAVPLFIGGVTVALVLGIVYGLTHLTELSIFTLNVASLLGLG LSIDYSLFLVSRFREELASHDLADAVARTTATAGRAVFFSGLTVLIGLSGLGFFEFLFMRSVGIAGMLVVLVAVSASLTL LPAVLGILGRRIDALRVIRRDTETGRFWHWITEFVMQRPWQVALPVVALLVLLGLPFRHVELSSPDATILPTSTPSRQAL ETFRRAFGDGELSPIVIAVETERPVNDPQTLAALYDFTRRLAADPRVTKVTSIVTIDPRISLAQYQLLYADPERIPEPLL QRVYRELAGDHLTAIYVYTDALPASDRAKALLHDIRAMDPGPGLKLWVDGGTAEIVDVVDRMYSEFPLAASTVILATYIV LFLLLRSVFLPLKAIILNVLSLTASYGALVFVFQEGHFSSLLRFSPLGFTEASLPIVMFCILFGVSMDYEVFLLSRMRES WDQTQDNRLAVATGLARSGRIITGAALILVVVAAAFVTADVVLIKALGLGIALAIALDASIVRTLLVPATMRLLGQWNWW VPRRLARTLDTVRIGH
Sequences:
>Translated_736_residues MVFERIGRFSFRYRWFVLALWLVVVLAVLPTLPRATGRLEVGGFSSPHTEAARTRELLRERIPGYSPSSLLVLFSHPTLS PSDPAFVEQAQRALSAVPSIPHVTGIRWFTENPSQIAPDGSLAYAVIELDLQPEEAQRVLDEIQEAIIRTDLQVQLAGAP AFYADLERVTERDLRRAELIAFPFALAALLFVFGSAVAAAVPLFIGGVTVALVLGIVYGLTHLTELSIFTLNVASLLGLG LSIDYSLFLVSRFREELASHDLADAVARTTATAGRAVFFSGLTVLIGLSGLGFFEFLFMRSVGIAGMLVVLVAVSASLTL LPAVLGILGRRIDALRVIRRDTETGRFWHWITEFVMQRPWQVALPVVALLVLLGLPFRHVELSSPDATILPTSTPSRQAL ETFRRAFGDGELSPIVIAVETERPVNDPQTLAALYDFTRRLAADPRVTKVTSIVTIDPRISLAQYQLLYADPERIPEPLL QRVYRELAGDHLTAIYVYTDALPASDRAKALLHDIRAMDPGPGLKLWVDGGTAEIVDVVDRMYSEFPLAASTVILATYIV LFLLLRSVFLPLKAIILNVLSLTASYGALVFVFQEGHFSSLLRFSPLGFTEASLPIVMFCILFGVSMDYEVFLLSRMRES WDQTQDNRLAVATGLARSGRIITGAALILVVVAAAFVTADVVLIKALGLGIALAIALDASIVRTLLVPATMRLLGQWNWW VPRRLARTLDTVRIGH >Mature_736_residues MVFERIGRFSFRYRWFVLALWLVVVLAVLPTLPRATGRLEVGGFSSPHTEAARTRELLRERIPGYSPSSLLVLFSHPTLS PSDPAFVEQAQRALSAVPSIPHVTGIRWFTENPSQIAPDGSLAYAVIELDLQPEEAQRVLDEIQEAIIRTDLQVQLAGAP AFYADLERVTERDLRRAELIAFPFALAALLFVFGSAVAAAVPLFIGGVTVALVLGIVYGLTHLTELSIFTLNVASLLGLG LSIDYSLFLVSRFREELASHDLADAVARTTATAGRAVFFSGLTVLIGLSGLGFFEFLFMRSVGIAGMLVVLVAVSASLTL LPAVLGILGRRIDALRVIRRDTETGRFWHWITEFVMQRPWQVALPVVALLVLLGLPFRHVELSSPDATILPTSTPSRQAL ETFRRAFGDGELSPIVIAVETERPVNDPQTLAALYDFTRRLAADPRVTKVTSIVTIDPRISLAQYQLLYADPERIPEPLL QRVYRELAGDHLTAIYVYTDALPASDRAKALLHDIRAMDPGPGLKLWVDGGTAEIVDVVDRMYSEFPLAASTVILATYIV LFLLLRSVFLPLKAIILNVLSLTASYGALVFVFQEGHFSSLLRFSPLGFTEASLPIVMFCILFGVSMDYEVFLLSRMRES WDQTQDNRLAVATGLARSGRIITGAALILVVVAAAFVTADVVLIKALGLGIALAIALDASIVRTLLVPATMRLLGQWNWW VPRRLARTLDTVRIGH
Specific function: Unknown
COG id: COG2409
COG function: function code R; Predicted drug exporters of the RND superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mmpL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004869 - InterPro: IPR000731 [H]
Pfam domain/function: PF03176 MMPL [H]
EC number: NA
Molecular weight: Translated: 80785; Mature: 80785
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFERIGRFSFRYRWFVLALWLVVVLAVLPTLPRATGRLEVGGFSSPHTEAARTRELLRE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH RIPGYSPSSLLVLFSHPTLSPSDPAFVEQAQRALSAVPSIPHVTGIRWFTENPSQIAPDG HCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC SLAYAVIELDLQPEEAQRVLDEIQEAIIRTDLQVQLAGAPAFYADLERVTERDLRRAELI CEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH AFPFALAALLFVFGSAVAAAVPLFIGGVTVALVLGIVYGLTHLTELSIFTLNVASLLGLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSIDYSLFLVSRFREELASHDLADAVARTTATAGRAVFFSGLTVLIGLSGLGFFEFLFMR CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH SVGIAGMLVVLVAVSASLTLLPAVLGILGRRIDALRVIRRDTETGRFWHWITEFVMQRPW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCH QVALPVVALLVLLGLPFRHVELSSPDATILPTSTPSRQALETFRRAFGDGELSPIVIAVE HHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEE TERPVNDPQTLAALYDFTRRLAADPRVTKVTSIVTIDPRISLAQYQLLYADPERIPEPLL CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHEEECCHHHCCHHHH QRVYRELAGDHLTAIYVYTDALPASDRAKALLHDIRAMDPGPGLKLWVDGGTAEIVDVVD HHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH RMYSEFPLAASTVILATYIVLFLLLRSVFLPLKAIILNVLSLTASYGALVFVFQEGHFSS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH LLRFSPLGFTEASLPIVMFCILFGVSMDYEVFLLSRMRESWDQTQDNRLAVATGLARSGR HHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC IITGAALILVVVAAAFVTADVVLIKALGLGIALAIALDASIVRTLLVPATMRLLGQWNWW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VPRRLARTLDTVRIGH HHHHHHHHHHHHCCCC >Mature Secondary Structure MVFERIGRFSFRYRWFVLALWLVVVLAVLPTLPRATGRLEVGGFSSPHTEAARTRELLRE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH RIPGYSPSSLLVLFSHPTLSPSDPAFVEQAQRALSAVPSIPHVTGIRWFTENPSQIAPDG HCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC SLAYAVIELDLQPEEAQRVLDEIQEAIIRTDLQVQLAGAPAFYADLERVTERDLRRAELI CEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH AFPFALAALLFVFGSAVAAAVPLFIGGVTVALVLGIVYGLTHLTELSIFTLNVASLLGLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSIDYSLFLVSRFREELASHDLADAVARTTATAGRAVFFSGLTVLIGLSGLGFFEFLFMR CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH SVGIAGMLVVLVAVSASLTLLPAVLGILGRRIDALRVIRRDTETGRFWHWITEFVMQRPW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCH QVALPVVALLVLLGLPFRHVELSSPDATILPTSTPSRQALETFRRAFGDGELSPIVIAVE HHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEE TERPVNDPQTLAALYDFTRRLAADPRVTKVTSIVTIDPRISLAQYQLLYADPERIPEPLL CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHEEECCHHHCCHHHH QRVYRELAGDHLTAIYVYTDALPASDRAKALLHDIRAMDPGPGLKLWVDGGTAEIVDVVD HHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH RMYSEFPLAASTVILATYIVLFLLLRSVFLPLKAIILNVLSLTASYGALVFVFQEGHFSS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH LLRFSPLGFTEASLPIVMFCILFGVSMDYEVFLLSRMRESWDQTQDNRLAVATGLARSGR HHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC IITGAALILVVVAAAFVTADVVLIKALGLGIALAIALDASIVRTLLVPATMRLLGQWNWW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VPRRLARTLDTVRIGH HHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]