| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632397
Identifier: 221632397
GI number: 221632397
Start: 371849
End: 372949
Strand: Reverse
Name: 221632397
Synonym: trd_0369
Alternate gene names: NA
Gene position: 372949-371849 (Counterclockwise)
Preceding gene: 221632398
Following gene: 221632396
Centisome position: 18.62
GC content: 63.03
Gene sequence:
>1101_bases ATGCGCCGACGAGCATTTCTCGGCACCCTCGCACTCGGGCTGCTCGCCTGCCGAAGCTCCAATGGGCCGCAGTCACAGGA GCCGATGGGGCCGACCCCATCAGCCAGCCCGCGACCAGCCAGTCTCTTCCTCACACCACCGCCAGCACCCGGCCCAGTCG TGTTTCCGCGTGATTTCGGCTCCCACGATGTTTTGACCGAATGGTGGTACGACACTGGTCATCTTCGATCCGCGGCGGGC GAGCGGTTCGGTTTCGAGTTCGTCATCTTCCAGGTGCAGCGCTTCGGCTATCCCGTCGTCTATGCCGCACACGCTGCGCT GACGCTCGTCGATCGACAGGCCTTCCTGTGGGACGAACGGTTGATCGCTGTCCCGCAGCGGCAGGAGAGCTGGCCACTGG CCCTTGCCGTCGGCGATTGGACACTGACCAGCGATGGTGAGTCGGATCGGATCACGGTCCGCAGCGGATCGTTCGGCTTT ACCCTGGAACTCCAAAATCTCCGCCCACCGCTCCTGCATGACGAGGATGGCTACTTTTCCTGGGCACCAGAGACCGGCTC CTACTACTATTCGCGCACACGGTTGGCGACCCGGGGCGTCGTTTCTGTCGGCGGTCACGACGTCAGCGTTTCTGGCGTCG CGTGGAACGATCACCAGTGGGGCAACTTTCTCCTCGGAGGAGGCGGGTGGGATTGGTTCGCCATTCAACTCGAAGACGGC ACCGACCTCATGCTCTGGCAATCGCGTGATGCTGCTCAACGCGTCATCCAGCGGAGCGGCACGCTGCTCCGAGCCGATGG AAGTATCCGCTGGCTGCACGACGCCGAGATCGGTCTCCACGCGACCGGATCCTGGCAAAGTCCGCACAGCGGTGCGATCT ACCCGAGCGGGTGGCAGATCGAGCTCCCTCCTGACATGACGCTCACGGTTACCCCGCTCGTCCTCGATCAGGAGTTGCAA ACCGTGCGTTCGACGGGAGTGATCTACTGGGAAGGCGCTGTTTCGGTCATCGCTGCACAGGCTGGTGTGAAAACAATCGG TCAGGGGTACGTGGAGCTGACCGGATACGCCACACCCTCGGTTCCGGTTACCCCACCGTGA
Upstream 100 bases:
>100_bases GCTGCTCGTCCCCGCCACGATGCGCCTACTCGGCCAATGGAACTGGTGGGTTCCGCGCCGCCTCGCGCGGACTCTCGACA CGGTACGGATCGGACACTGA
Downstream 100 bases:
>100_bases GCGATCAGGTCCAGTGAACAAGCCGGGACGGCATGACGCAGCGGAGCACACGCGAGTACTCTTGACAGGTCTCAGCGAAA ACGCTAGAATAGCCGCCAAC
Product: putative AttH
Products: NA
Alternate protein names: Secreted Hydrolase; Hydrolase; Lipoprotein; ABC Transporter Type C Secreted Protein; Hydroxyneurosporene Synthase; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MRRRAFLGTLALGLLACRSSNGPQSQEPMGPTPSASPRPASLFLTPPPAPGPVVFPRDFGSHDVLTEWWYDTGHLRSAAG ERFGFEFVIFQVQRFGYPVVYAAHAALTLVDRQAFLWDERLIAVPQRQESWPLALAVGDWTLTSDGESDRITVRSGSFGF TLELQNLRPPLLHDEDGYFSWAPETGSYYYSRTRLATRGVVSVGGHDVSVSGVAWNDHQWGNFLLGGGGWDWFAIQLEDG TDLMLWQSRDAAQRVIQRSGTLLRADGSIRWLHDAEIGLHATGSWQSPHSGAIYPSGWQIELPPDMTLTVTPLVLDQELQ TVRSTGVIYWEGAVSVIAAQAGVKTIGQGYVELTGYATPSVPVTPP
Sequences:
>Translated_366_residues MRRRAFLGTLALGLLACRSSNGPQSQEPMGPTPSASPRPASLFLTPPPAPGPVVFPRDFGSHDVLTEWWYDTGHLRSAAG ERFGFEFVIFQVQRFGYPVVYAAHAALTLVDRQAFLWDERLIAVPQRQESWPLALAVGDWTLTSDGESDRITVRSGSFGF TLELQNLRPPLLHDEDGYFSWAPETGSYYYSRTRLATRGVVSVGGHDVSVSGVAWNDHQWGNFLLGGGGWDWFAIQLEDG TDLMLWQSRDAAQRVIQRSGTLLRADGSIRWLHDAEIGLHATGSWQSPHSGAIYPSGWQIELPPDMTLTVTPLVLDQELQ TVRSTGVIYWEGAVSVIAAQAGVKTIGQGYVELTGYATPSVPVTPP >Mature_366_residues MRRRAFLGTLALGLLACRSSNGPQSQEPMGPTPSASPRPASLFLTPPPAPGPVVFPRDFGSHDVLTEWWYDTGHLRSAAG ERFGFEFVIFQVQRFGYPVVYAAHAALTLVDRQAFLWDERLIAVPQRQESWPLALAVGDWTLTSDGESDRITVRSGSFGF TLELQNLRPPLLHDEDGYFSWAPETGSYYYSRTRLATRGVVSVGGHDVSVSGVAWNDHQWGNFLLGGGGWDWFAIQLEDG TDLMLWQSRDAAQRVIQRSGTLLRADGSIRWLHDAEIGLHATGSWQSPHSGAIYPSGWQIELPPDMTLTVTPLVLDQELQ TVRSTGVIYWEGAVSVIAAQAGVKTIGQGYVELTGYATPSVPVTPP
Specific function: Unknown
COG id: COG5621
COG function: function code R; Predicted secreted hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40178; Mature: 40178
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRAFLGTLALGLLACRSSNGPQSQEPMGPTPSASPRPASLFLTPPPAPGPVVFPRDFG CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCC SHDVLTEWWYDTGHLRSAAGERFGFEFVIFQVQRFGYPVVYAAHAALTLVDRQAFLWDER CCCCCHHHCCCCCHHHHHCCCCCCEEEEEEEEHHCCCCEEEEHHEEEEEECCHHHEECCE LIAVPQRQESWPLALAVGDWTLTSDGESDRITVRSGSFGFTLELQNLRPPLLHDEDGYFS EEECCCCCCCCCEEEEEECEEEECCCCCCEEEEECCCEEEEEEECCCCCCCEECCCCCEE WAPETGSYYYSRTRLATRGVVSVGGHDVSVSGVAWNDHQWGNFLLGGGGWDWFAIQLEDG ECCCCCCEEEEEEEEEECCEEEECCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEECCC TDLMLWQSRDAAQRVIQRSGTLLRADGSIRWLHDAEIGLHATGSWQSPHSGAIYPSGWQI CEEEEECCCHHHHHHHHHCCCEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCEE ELPPDMTLTVTPLVLDQELQTVRSTGVIYWEGAVSVIAAQAGVKTIGQGYVELTGYATPS ECCCCCEEEEEEEEECHHHHHHHHCCEEEECCCEEEEHHHCCHHHHCCCEEEEEEECCCC VPVTPP CCCCCC >Mature Secondary Structure MRRRAFLGTLALGLLACRSSNGPQSQEPMGPTPSASPRPASLFLTPPPAPGPVVFPRDFG CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCC SHDVLTEWWYDTGHLRSAAGERFGFEFVIFQVQRFGYPVVYAAHAALTLVDRQAFLWDER CCCCCHHHCCCCCHHHHHCCCCCCEEEEEEEEHHCCCCEEEEHHEEEEEECCHHHEECCE LIAVPQRQESWPLALAVGDWTLTSDGESDRITVRSGSFGFTLELQNLRPPLLHDEDGYFS EEECCCCCCCCCEEEEEECEEEECCCCCCEEEEECCCEEEEEEECCCCCCCEECCCCCEE WAPETGSYYYSRTRLATRGVVSVGGHDVSVSGVAWNDHQWGNFLLGGGGWDWFAIQLEDG ECCCCCCEEEEEEEEEECCEEEECCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEECCC TDLMLWQSRDAAQRVIQRSGTLLRADGSIRWLHDAEIGLHATGSWQSPHSGAIYPSGWQI CEEEEECCCHHHHHHHHHCCCEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCEE ELPPDMTLTVTPLVLDQELQTVRSTGVIYWEGAVSVIAAQAGVKTIGQGYVELTGYATPS ECCCCCEEEEEEEEECHHHHHHHHCCEEEECCCEEEEHHHCCHHHHCCCEEEEEEECCCC VPVTPP CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA