Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221632330

Identifier: 221632330

GI number: 221632330

Start: 304841

End: 305113

Strand: Reverse

Name: 221632330

Synonym: trd_0301

Alternate gene names: NA

Gene position: 305113-304841 (Counterclockwise)

Preceding gene: 221632331

Following gene: 221632329

Centisome position: 15.23

GC content: 60.81

Gene sequence:

>273_bases
ATGAGCGCGTCACCAACGGTGCTTCGAGCAATCGATCGCGCACTCGACCGGATCCGGGAGGGATTGGCACCGGACGGGTT
CGAGCTGCGCGTCGAGCGTGTCACGGACGAGGGTATCGTCGAATTAGTGCTCCAGGCATTACCCGATGCGTGCCTGGACT
GCCTCGTTCCTGACCAGCTGCTGGATGCGATGCTGCGACAGGCGATCGCTCCCGTTTATCCAGCGCTACGTGAGGTCCGT
TTGGAAAAGCGACTACCAGAGGAGGGACGATAA

Upstream 100 bases:

>100_bases
GACATTCCAGCTGAATTGGCCGGTATCCAACTGGTGACGGTCTGATCGCTCGTGCAGAACGACAGAGGTCGATAAGGCGA
AAGGAGGCCGTGGAAGAACG

Downstream 100 bases:

>100_bases
TGCCAATTCTCGTGGATCCGACAGGACAAACCGGGCTCGTTACCAAGGCGAAGGCCCCACGCGTTCGACGCTCGCTACAT
GGCGCGCGCGTCTGCCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVR
LEKRLPEEGR

Sequences:

>Translated_90_residues
MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVR
LEKRLPEEGR
>Mature_89_residues
SASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVRL
EKRLPEEGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10049; Mature: 9918

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQL
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHH
LDAMLRQAIAPVYPALREVRLEKRLPEEGR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQL
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHH
LDAMLRQAIAPVYPALREVRLEKRLPEEGR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA