| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
Click here to switch to the map view.
The map label for this gene is 22127449
Identifier: 22127449
GI number: 22127449
Start: 3959310
End: 3959930
Strand: Reverse
Name: 22127449
Synonym: y3575
Alternate gene names: NA
Gene position: 3959930-3959310 (Counterclockwise)
Preceding gene: 22127450
Following gene: 22127448
Centisome position: 86.07
GC content: 59.9
Gene sequence:
>621_bases GTGATAAACAATGGGACAGCACCCGGTGCGATTGTCGCCCCACGTGATCGCGACAGCACGGGCAAGAATATCGCCGTCGA GTTCAACGGGATCGCCCTGACGCTCCCGCGCAGCGGGCTGTATCAGCTCAAGACCGATAAAGGTGACTATGCCCCCGGCC CGGAAGCGGCGTTATCTCTCGCGAATATCAGCCCCCCTTCCTCTCTCGATGCCACGGGCCCGCGTGGGGTTCCTCCCCCG TCTGACGATCTCAACCGAACCGGCCTTGTTACCCCAGATCGGGCGGTCAGCGGCGGCTATCTGGTGGAGACCCATCCGGC GTTTGCCAGCCTGAATAACTGGAAAGGGTCGGACCTCTATTTGCAGCAACTGAGCAGCGATCCTTCGGTGATACACAAAC GGCTGGGGGATAACGCTTATGAACAGCGGCTGTTACGGGATCAGGTGCTGGCGTTGACGGGGAGAACGGTGGCCAGTGAT TACCGTAGCGAACAGGCGCAGTTCGAGCAGCTCTTTGCCGCCGGGGTCCAGTACAGAAAAGCGTTCAATTTGGCACCGGG TACGCGCCTCAGTGCGGAGCAGATGGCAACCTTAACCGGCAATATCGTGCTGATGGAGTGA
Upstream 100 bases:
>100_bases CGCCTGGGGGCCGGAAATGAAGCTGCGCCCGAACAACCAATATGCCTCGAGCATCACTGCCAAAACCCTGACTGGCAGCG GCACGGTGATAAACAATACG
Downstream 100 bases:
>100_bases CGTCGCCGGGCAAACCGTATTAGTCCCCGTGATCTAAGCGCCAACGTAGACAATCTGACCGCCGTGGGGGCGCGGGTGAA TGCCGGTACCATCGATGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Hemagglutinin Family Outer Membrane Protein; Hemagglutinin-Related Protein; Hemagglutinin/Hemolysin-Related Protein; Hemagglutinin; Filamentous Haemagglutinin; Filamentous Hemagglutinin; Adhesin; Adhesin/Hemolysin; Large Exoprotein Involved In Heme Utilization Or Adhesion; Cell Surface Protein; Adhesin/Hemagglutinin; Hemolysin; Filamentous Hemagglutinin Outer Membrane Protein; Adhesin/Hemagglutinin/Hemolysin; FHA-Like Protein; Hemagglutinin-Like Secreted Protein; Filamentous Hemagglutinin Family Protein; FhaB Protein; Haemolysin/Haemagglutinin; Cell Surface Haemagluttinin Protein; Adhesin/Haemagluttinin; Adhesin/Hemolysin Adhesin HecA; Outer Membrane Surface Heamagglutinin Protein; TPS Family Two-Partner Secretion Family Protein TpsA; Adhesin HecA Family; Filamentous Haemagglutinin Family Outer Membrane Protein; Large Exoprotein Involved In Heme Utilizationor Adhesion; Filamentous Hemagglutinin Protein; Large Surface Adhesin; Filamentous Hemagglutinin / Adhesin; Hemagglutinin/Adhesin Repeat-Containing Protein; Hemagglutinin/Hemolysin Family Protein; Exoprotein Adhesin Or Hemolysin; Surface Adhesin; Hemagglutinin-Like Protein; Filamentous Haemagglutinin Intein-Containing; Haemagglutination Activity Domain Protein; Filamentous Haemagglutinin Adhesin HecA; Haemagglutinin/Haemolysin-Related Protein; Hemagglutination Repeat-Containing Protein; Hemagglutination Activity Domain Protein; Filamentous Hemagglutinin Intein-Containing
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MINNGTAPGAIVAPRDRDSTGKNIAVEFNGIALTLPRSGLYQLKTDKGDYAPGPEAALSLANISPPSSLDATGPRGVPPP SDDLNRTGLVTPDRAVSGGYLVETHPAFASLNNWKGSDLYLQQLSSDPSVIHKRLGDNAYEQRLLRDQVLALTGRTVASD YRSEQAQFEQLFAAGVQYRKAFNLAPGTRLSAEQMATLTGNIVLME
Sequences:
>Translated_206_residues MINNGTAPGAIVAPRDRDSTGKNIAVEFNGIALTLPRSGLYQLKTDKGDYAPGPEAALSLANISPPSSLDATGPRGVPPP SDDLNRTGLVTPDRAVSGGYLVETHPAFASLNNWKGSDLYLQQLSSDPSVIHKRLGDNAYEQRLLRDQVLALTGRTVASD YRSEQAQFEQLFAAGVQYRKAFNLAPGTRLSAEQMATLTGNIVLME >Mature_206_residues MINNGTAPGAIVAPRDRDSTGKNIAVEFNGIALTLPRSGLYQLKTDKGDYAPGPEAALSLANISPPSSLDATGPRGVPPP SDDLNRTGLVTPDRAVSGGYLVETHPAFASLNNWKGSDLYLQQLSSDPSVIHKRLGDNAYEQRLLRDQVLALTGRTVASD YRSEQAQFEQLFAAGVQYRKAFNLAPGTRLSAEQMATLTGNIVLME
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22040; Mature: 22040
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINNGTAPGAIVAPRDRDSTGKNIAVEFNGIALTLPRSGLYQLKTDKGDYAPGPEAALSL CCCCCCCCCEEECCCCCCCCCCEEEEEECCEEEECCCCCCEEEECCCCCCCCCHHHHEEE ANISPPSSLDATGPRGVPPPSDDLNRTGLVTPDRAVSGGYLVETHPAFASLNNWKGSDLY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCHHH LQQLSSDPSVIHKRLGDNAYEQRLLRDQVLALTGRTVASDYRSEQAQFEQLFAAGVQYRK HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH AFNLAPGTRLSAEQMATLTGNIVLME HHCCCCCCCCCHHHHHHHCCCEEEEC >Mature Secondary Structure MINNGTAPGAIVAPRDRDSTGKNIAVEFNGIALTLPRSGLYQLKTDKGDYAPGPEAALSL CCCCCCCCCEEECCCCCCCCCCEEEEEECCEEEECCCCCCEEEECCCCCCCCCHHHHEEE ANISPPSSLDATGPRGVPPPSDDLNRTGLVTPDRAVSGGYLVETHPAFASLNNWKGSDLY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCHHH LQQLSSDPSVIHKRLGDNAYEQRLLRDQVLALTGRTVASDYRSEQAQFEQLFAAGVQYRK HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH AFNLAPGTRLSAEQMATLTGNIVLME HHCCCCCCCCCHHHHHHHCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA