| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is tlpB [H]
Identifier: 220932916
GI number: 220932916
Start: 2256301
End: 2258322
Strand: Reverse
Name: tlpB [H]
Synonym: Hore_20840
Alternate gene names: 220932916
Gene position: 2258322-2256301 (Counterclockwise)
Preceding gene: 220932917
Following gene: 220932915
Centisome position: 87.59
GC content: 39.86
Gene sequence:
>2022_bases ATGAAGAAGATCAGTTATAAAATAATGGCTGCTATTGCAGTTATATCATTAATTGTGGCCCTCAGCACTGGGGGTTATAG TATTTACAAAAGCAGCAGGGTTATTCAAAATGAAGCCAGGGATAAGCTTCTTTTACTTACTGAAAGTAAGGTAGGTTCTT TAAATAATTTGATTACAGCCATAGAAAGTGGAGCAGATGGTCTGGCAACTGCCCTGGCAGCTACTTTTAAAGAAGAACAG ATGAGGAGTAGTAGGTTATATGTGATGGTTTATAAATCAAAGGTAGAACCAATTTTAAAACAATTTTCTGATACAAACCA GCATATAATCAGGTCATTTTTTATGGTAAATCCGGAAATGATAGGGCGTAATTTTGTAATAGAATATTCCCGGGATACGG GGACTAAAGATGCTGAACAATCTCTGGAAGACCTGACTTCAGAAAAGTCAAAAGAAAAGGTTGCCTGGTATGAAGAAGTA GTAAAAATAAAAGAAGGGAAATGGTTTAAGAAAAAAACAGATGATGTAATTTCATATCGTAAACCTGTATACAAAGACGG TAAAATCATCGGGGTAGTCGGTTTTGATATTGATTTTTCAATATTCAGAGAAACGGTTAGCAAAATTAAGGTATTTAAGA GTGGTTATGCCTTTTTACTTGACAATAATTACCGGTACCTTGTAGCTCCACCTATTAAACCAGAGCAAAGGGATTCTATA ACAAAAGAGATAACAGAGACCAGTTCCCGATTTATTGATTATAAAGAAAACGGGGAAGCCCGGTTTATGGCCCATGTACC CCTGTTAAATGGATATATTCTGGGTATTTCCCTGGCTAGAAGGGATATATTAAAGGAGATGTTTGATTTAACCAGGATTC TGGTTACCCTGACCGTACTGGAAATACTGGTGGCGGTTATAGTTGCTGCCTATATGGGACGCAGAATCGCTAAGCCTATT GTAAAATCTATTGATTTCGCCCAGTTGATTGCCAGTGGAAATTTAGCAATTGAACCCCTTTCTTATAAATCTTCAGGAGA GACGGGTATTCTCATCAGGGCCCTTAACAGAATGTATACAAATTTAAAGGAAATTATCACCCACGCCATTAAGGTAACAG GGGAGTTGACTTCTTTTATACAGCAGTTATCCCGGGCCGGTGATGAGGTTGAAGGTATTTCAAATGAAGTTACTAAGTCT ATCAGGGAGCTGGCAGTAGGGGTTGAAAAACAGGCTGAAAGTGTTGATGAAATTAACCTTGAGGTTCAGGCCTTATCCCG GGAGATTGATGGCCTGCAACAGGAAAATAACCAGGTCAAAGAGGTCTCCCAAAAAATGAATAAGGCGACCCGCTCGGGAC AGAAGAGGATGAAAAAAGTTGAGGGTCAGATGGAAGAGATTAAAAACTTTGTCCAGGAAGTAGCTACCGATATCGGTGCC TTAGAAGATATCTCGGTTGAGATTGATTCAATTCTGGAGATTATTAATAACATTGCCGAGCAGACCAACCTGCTGGCCTT AAATGCAGCTGTGGAAGCAGCCCGGGCCGGTGAAGCGGGTCGAGGTTTTGCTGTTGTCGCCGATGAAATCAGGGACCTTG CTGAAGAATCATCGAGCTCAGCTGATAAGATAAGAAAACTGGTTGAGAAGATAAAAACAGAAACCATGCAGGCGAGCCAG AAAATGTCTGAAGGTGTTAACAGAATCCAGGAGGGTGAAAAGGCTGTGAAACTGGCTGACAGGGCCTTTATGGAAATTAA TCAGGCCCTGGTTGAGGTTAACCGGGGTATTGAAAAAGCCACCGGGCTGGTAGATAAAGTAAATGAAAACAGTAGTCATA TTGCCGAAAACCTTGATAATATAGCTAATTATGCTGAAGAGAGCTCGGCAAGTAGCCAGCAAATTGCTACAGCCAGTAAT GAACAAGTTAATTCACTGACAAAATTTATAAACATGGCTAAATCCTTATCTGAACTATCCAGGCAACTTGATGATATTAT AAAAAGCTTTCAATTGAAATAA
Upstream 100 bases:
>100_bases GGGTTTAACTGCAGGAGCAGTCAAAGGTTAATATATATTTCAGAGCTACCCCATAGGGAATTTAAAAAAGGCTAAAAAAC CTTAAGAGGTGGGGAGCAGG
Downstream 100 bases:
>100_bases AAGGAGGGATCTAAATATACCATGGAATTGAAAAACAACTTATACACAGAAACAGGATGGGAAATATTTGAAAGAGAATA TGAAGATGAGCAGATGGTTA
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 673; Mature: 673
Protein sequence:
>673_residues MKKISYKIMAAIAVISLIVALSTGGYSIYKSSRVIQNEARDKLLLLTESKVGSLNNLITAIESGADGLATALAATFKEEQ MRSSRLYVMVYKSKVEPILKQFSDTNQHIIRSFFMVNPEMIGRNFVIEYSRDTGTKDAEQSLEDLTSEKSKEKVAWYEEV VKIKEGKWFKKKTDDVISYRKPVYKDGKIIGVVGFDIDFSIFRETVSKIKVFKSGYAFLLDNNYRYLVAPPIKPEQRDSI TKEITETSSRFIDYKENGEARFMAHVPLLNGYILGISLARRDILKEMFDLTRILVTLTVLEILVAVIVAAYMGRRIAKPI VKSIDFAQLIASGNLAIEPLSYKSSGETGILIRALNRMYTNLKEIITHAIKVTGELTSFIQQLSRAGDEVEGISNEVTKS IRELAVGVEKQAESVDEINLEVQALSREIDGLQQENNQVKEVSQKMNKATRSGQKRMKKVEGQMEEIKNFVQEVATDIGA LEDISVEIDSILEIINNIAEQTNLLALNAAVEAARAGEAGRGFAVVADEIRDLAEESSSSADKIRKLVEKIKTETMQASQ KMSEGVNRIQEGEKAVKLADRAFMEINQALVEVNRGIEKATGLVDKVNENSSHIAENLDNIANYAEESSASSQQIATASN EQVNSLTKFINMAKSLSELSRQLDDIIKSFQLK
Sequences:
>Translated_673_residues MKKISYKIMAAIAVISLIVALSTGGYSIYKSSRVIQNEARDKLLLLTESKVGSLNNLITAIESGADGLATALAATFKEEQ MRSSRLYVMVYKSKVEPILKQFSDTNQHIIRSFFMVNPEMIGRNFVIEYSRDTGTKDAEQSLEDLTSEKSKEKVAWYEEV VKIKEGKWFKKKTDDVISYRKPVYKDGKIIGVVGFDIDFSIFRETVSKIKVFKSGYAFLLDNNYRYLVAPPIKPEQRDSI TKEITETSSRFIDYKENGEARFMAHVPLLNGYILGISLARRDILKEMFDLTRILVTLTVLEILVAVIVAAYMGRRIAKPI VKSIDFAQLIASGNLAIEPLSYKSSGETGILIRALNRMYTNLKEIITHAIKVTGELTSFIQQLSRAGDEVEGISNEVTKS IRELAVGVEKQAESVDEINLEVQALSREIDGLQQENNQVKEVSQKMNKATRSGQKRMKKVEGQMEEIKNFVQEVATDIGA LEDISVEIDSILEIINNIAEQTNLLALNAAVEAARAGEAGRGFAVVADEIRDLAEESSSSADKIRKLVEKIKTETMQASQ KMSEGVNRIQEGEKAVKLADRAFMEINQALVEVNRGIEKATGLVDKVNENSSHIAENLDNIANYAEESSASSQQIATASN EQVNSLTKFINMAKSLSELSRQLDDIIKSFQLK >Mature_673_residues MKKISYKIMAAIAVISLIVALSTGGYSIYKSSRVIQNEARDKLLLLTESKVGSLNNLITAIESGADGLATALAATFKEEQ MRSSRLYVMVYKSKVEPILKQFSDTNQHIIRSFFMVNPEMIGRNFVIEYSRDTGTKDAEQSLEDLTSEKSKEKVAWYEEV VKIKEGKWFKKKTDDVISYRKPVYKDGKIIGVVGFDIDFSIFRETVSKIKVFKSGYAFLLDNNYRYLVAPPIKPEQRDSI TKEITETSSRFIDYKENGEARFMAHVPLLNGYILGISLARRDILKEMFDLTRILVTLTVLEILVAVIVAAYMGRRIAKPI VKSIDFAQLIASGNLAIEPLSYKSSGETGILIRALNRMYTNLKEIITHAIKVTGELTSFIQQLSRAGDEVEGISNEVTKS IRELAVGVEKQAESVDEINLEVQALSREIDGLQQENNQVKEVSQKMNKATRSGQKRMKKVEGQMEEIKNFVQEVATDIGA LEDISVEIDSILEIINNIAEQTNLLALNAAVEAARAGEAGRGFAVVADEIRDLAEESSSSADKIRKLVEKIKTETMQASQ KMSEGVNRIQEGEKAVKLADRAFMEINQALVEVNRGIEKATGLVDKVNENSSHIAENLDNIANYAEESSASSQQIATASN EQVNSLTKFINMAKSLSELSRQLDDIIKSFQLK
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Homo sapiens, GI119466532, Length=325, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI28559088, Length=325, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1788195, Length=311, Percent_Identity=30.2250803858521, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI2367378, Length=262, Percent_Identity=31.2977099236641, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1789453, Length=333, Percent_Identity=28.8288288288288, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1788194, Length=354, Percent_Identity=28.8135593220339, Blast_Score=99, Evalue=7e-22, Organism=Escherichia coli, GI1787690, Length=447, Percent_Identity=27.9642058165548, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004010 - InterPro: IPR003122 - InterPro: IPR004089 - InterPro: IPR003660 - InterPro: IPR022094 [H]
Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 75014; Mature: 75014
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKISYKIMAAIAVISLIVALSTGGYSIYKSSRVIQNEARDKLLLLTESKVGSLNNLITA CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH IESGADGLATALAATFKEEQMRSSRLYVMVYKSKVEPILKQFSDTNQHIIRSFFMVNPEM HHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHH IGRNFVIEYSRDTGTKDAEQSLEDLTSEKSKEKVAWYEEVVKIKEGKWFKKKTDDVISYR HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC KPVYKDGKIIGVVGFDIDFSIFRETVSKIKVFKSGYAFLLDNNYRYLVAPPIKPEQRDSI CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCHHHHH TKEITETSSRFIDYKENGEARFMAHVPLLNGYILGISLARRDILKEMFDLTRILVTLTVL HHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EILVAVIVAAYMGRRIAKPIVKSIDFAQLIASGNLAIEPLSYKSSGETGILIRALNRMYT HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH NLKEIITHAIKVTGELTSFIQQLSRAGDEVEGISNEVTKSIRELAVGVEKQAESVDEINL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVQALSREIDGLQQENNQVKEVSQKMNKATRSGQKRMKKVEGQMEEIKNFVQEVATDIGA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LEDISVEIDSILEIINNIAEQTNLLALNAAVEAARAGEAGRGFAVVADEIRDLAEESSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC ADKIRKLVEKIKTETMQASQKMSEGVNRIQEGEKAVKLADRAFMEINQALVEVNRGIEKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGLVDKVNENSSHIAENLDNIANYAEESSASSQQIATASNEQVNSLTKFINMAKSLSELS HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH RQLDDIIKSFQLK HHHHHHHHHHCCC >Mature Secondary Structure MKKISYKIMAAIAVISLIVALSTGGYSIYKSSRVIQNEARDKLLLLTESKVGSLNNLITA CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH IESGADGLATALAATFKEEQMRSSRLYVMVYKSKVEPILKQFSDTNQHIIRSFFMVNPEM HHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHH IGRNFVIEYSRDTGTKDAEQSLEDLTSEKSKEKVAWYEEVVKIKEGKWFKKKTDDVISYR HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC KPVYKDGKIIGVVGFDIDFSIFRETVSKIKVFKSGYAFLLDNNYRYLVAPPIKPEQRDSI CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCHHHHH TKEITETSSRFIDYKENGEARFMAHVPLLNGYILGISLARRDILKEMFDLTRILVTLTVL HHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EILVAVIVAAYMGRRIAKPIVKSIDFAQLIASGNLAIEPLSYKSSGETGILIRALNRMYT HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH NLKEIITHAIKVTGELTSFIQQLSRAGDEVEGISNEVTKSIRELAVGVEKQAESVDEINL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVQALSREIDGLQQENNQVKEVSQKMNKATRSGQKRMKKVEGQMEEIKNFVQEVATDIGA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LEDISVEIDSILEIINNIAEQTNLLALNAAVEAARAGEAGRGFAVVADEIRDLAEESSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC ADKIRKLVEKIKTETMQASQKMSEGVNRIQEGEKAVKLADRAFMEINQALVEVNRGIEKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGLVDKVNENSSHIAENLDNIANYAEESSASSQQIATASNEQVNSLTKFINMAKSLSELS HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH RQLDDIIKSFQLK HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8188684; 9384377 [H]