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The map label for this gene is ycjN [C]

Identifier: 220932884

GI number: 220932884

Start: 2215698

End: 2216951

Strand: Reverse

Name: ycjN [C]

Synonym: Hore_20520

Alternate gene names: 220932884

Gene position: 2216951-2215698 (Counterclockwise)

Preceding gene: 220932885

Following gene: 220932883

Centisome position: 85.99

GC content: 41.31

Gene sequence:

>1254_bases
ATGAGTAAAAGGGTATTAATGGTTTTGAGCCTGGTCCTGGTATTGTTGGTTTCTCTGTCCACTGTTTCTATGGCTAAAAA
AGTCTTAACTATTAACAGTTATATCAGTGACCCTGTCCCCAAAGAAGCTTTTGAAGATGTTATTAAGGCCTTTGAAGAAG
CACACCCTGATATTGATGTCCGGGTAAGTACTACTGCTCATGAAGATTTTAAAAAGGCCCTGAGGATCTGGTTAAGTTCT
GATAATCCACCAGATGTCATCACCTGGTTTGCCGGTAACAGGGCAAAATATTTTATTAACAAGGGTTTAATTATGGCTAT
AACTGATGTCTGGGAAGAAGCGGATCTTTACAATAAATTCCCCCGGGCTTTCAGGAGTATAAGTTTTGTTAATGGAAAAG
CTTATTTCCTTCCTTATAACTGGTACTGGTGGGGAATGTTTTACCGTAAGTCCATCTTTGATAAGTATGGGCTTGAAGAA
CCCCGGACCTGGGATGAATTTTTAGATGTCTGTGAAACCCTCAAACAAAACGGTATTACTCCGATAACAATCGGGACCAA
ATACCGCTGGACTGCTACTGGGTGGTTTGATTATCTCAACATGAGGGTTAATGGGCCCGAATTTCATATCAGGTTGATGG
AAGGTAAAGAGAAATATAATGATCCCCGGGTTAAGAAGGTATTTGAGTACTGGCGTCAGTTACTGGATAGGGGATATTTT
GTTGACAATGCGGCTGCCTATTCCTGGCAGGAAGGTGTAAGGTTTATGGTTAAGGGAGAAGCTGCAATGTACTTGATGGG
TCAGTTTATTCTGGATGCTGTTCCTGAGGAGGTAGCTAAAGACCTTGACTTTTTCCGCTTCCCTATAATTAATGAAGATG
TACCTATTGGGGAAGATACTCCTACTGATGGGTTTATGATTCCTAAGAAAGCTAAAAACCCGGAACTTGCTAAAGAATTC
CTCAAGTTCCTGGCTTCCAGAGAAGGGCAGATGATCTTTATAGAAAAAACAGGCCGTATCGGGGTTAATAATGAAATTCC
AATGGATTCCTACCCGCCTCTAACCCAGAAGGGTGTTAAGATGATTCAGGGAACCGATGCCCTGGCCCAGTTCTATGACA
GGGATACACCTCCAACTATGGCTGATAAAGGTATGAACGGATTAATGAATTTCTGGGCATACCCTGATCAGATAGATAAA
ATTCTTGATAACCTTGAAAGGCAGAGACAGATGATTTTTTCAGAACAGGAATAA

Upstream 100 bases:

>100_bases
TAGGAGGTGGTTATAAAACGGGTTTTTTTCTTTTTATATTTTAAAACGTTTTAATTTTTTAGATTTTCAAAACATAATTT
CTAAGAAAGGGGATTTTTTA

Downstream 100 bases:

>100_bases
CAATTGAAACGGGAAGAGGGACCTTCCCTCTTCCCAATTTATACTTATAAGAAGCAGCAAATCCTAATAAAGGCTGGTGG
AAATATGAACAAACATCGTC

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSKRVLMVLSLVLVLLVSLSTVSMAKKVLTINSYISDPVPKEAFEDVIKAFEEAHPDIDVRVSTTAHEDFKKALRIWLSS
DNPPDVITWFAGNRAKYFINKGLIMAITDVWEEADLYNKFPRAFRSISFVNGKAYFLPYNWYWWGMFYRKSIFDKYGLEE
PRTWDEFLDVCETLKQNGITPITIGTKYRWTATGWFDYLNMRVNGPEFHIRLMEGKEKYNDPRVKKVFEYWRQLLDRGYF
VDNAAAYSWQEGVRFMVKGEAAMYLMGQFILDAVPEEVAKDLDFFRFPIINEDVPIGEDTPTDGFMIPKKAKNPELAKEF
LKFLASREGQMIFIEKTGRIGVNNEIPMDSYPPLTQKGVKMIQGTDALAQFYDRDTPPTMADKGMNGLMNFWAYPDQIDK
ILDNLERQRQMIFSEQE

Sequences:

>Translated_417_residues
MSKRVLMVLSLVLVLLVSLSTVSMAKKVLTINSYISDPVPKEAFEDVIKAFEEAHPDIDVRVSTTAHEDFKKALRIWLSS
DNPPDVITWFAGNRAKYFINKGLIMAITDVWEEADLYNKFPRAFRSISFVNGKAYFLPYNWYWWGMFYRKSIFDKYGLEE
PRTWDEFLDVCETLKQNGITPITIGTKYRWTATGWFDYLNMRVNGPEFHIRLMEGKEKYNDPRVKKVFEYWRQLLDRGYF
VDNAAAYSWQEGVRFMVKGEAAMYLMGQFILDAVPEEVAKDLDFFRFPIINEDVPIGEDTPTDGFMIPKKAKNPELAKEF
LKFLASREGQMIFIEKTGRIGVNNEIPMDSYPPLTQKGVKMIQGTDALAQFYDRDTPPTMADKGMNGLMNFWAYPDQIDK
ILDNLERQRQMIFSEQE
>Mature_416_residues
SKRVLMVLSLVLVLLVSLSTVSMAKKVLTINSYISDPVPKEAFEDVIKAFEEAHPDIDVRVSTTAHEDFKKALRIWLSSD
NPPDVITWFAGNRAKYFINKGLIMAITDVWEEADLYNKFPRAFRSISFVNGKAYFLPYNWYWWGMFYRKSIFDKYGLEEP
RTWDEFLDVCETLKQNGITPITIGTKYRWTATGWFDYLNMRVNGPEFHIRLMEGKEKYNDPRVKKVFEYWRQLLDRGYFV
DNAAAYSWQEGVRFMVKGEAAMYLMGQFILDAVPEEVAKDLDFFRFPIINEDVPIGEDTPTDGFMIPKKAKNPELAKEFL
KFLASREGQMIFIEKTGRIGVNNEIPMDSYPPLTQKGVKMIQGTDALAQFYDRDTPPTMADKGMNGLMNFWAYPDQIDKI
LDNLERQRQMIFSEQE

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16 [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48564; Mature: 48433

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRVLMVLSLVLVLLVSLSTVSMAKKVLTINSYISDPVPKEAFEDVIKAFEEAHPDIDV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE
RVSTTAHEDFKKALRIWLSSDNPPDVITWFAGNRAKYFINKGLIMAITDVWEEADLYNKF
EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCHHEEHHHHHHHHHHHHHH
PRAFRSISFVNGKAYFLPYNWYWWGMFYRKSIFDKYGLEEPRTWDEFLDVCETLKQNGIT
HHHHHHHEEECCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
PITIGTKYRWTATGWFDYLNMRVNGPEFHIRLMEGKEKYNDPRVKKVFEYWRQLLDRGYF
EEEECCEEEEEECCCEEEEEEEECCCEEEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCE
VDNAAAYSWQEGVRFMVKGEAAMYLMGQFILDAVPEEVAKDLDFFRFPIINEDVPIGEDT
ECCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PTDGFMIPKKAKNPELAKEFLKFLASREGQMIFIEKTGRIGVNNEIPMDSYPPLTQKGVK
CCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
MIQGTDALAQFYDRDTPPTMADKGMNGLMNFWAYPDQIDKILDNLERQRQMIFSEQE
HHCCHHHHHHHHCCCCCCCHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKRVLMVLSLVLVLLVSLSTVSMAKKVLTINSYISDPVPKEAFEDVIKAFEEAHPDIDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE
RVSTTAHEDFKKALRIWLSSDNPPDVITWFAGNRAKYFINKGLIMAITDVWEEADLYNKF
EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCHHEEHHHHHHHHHHHHHH
PRAFRSISFVNGKAYFLPYNWYWWGMFYRKSIFDKYGLEEPRTWDEFLDVCETLKQNGIT
HHHHHHHEEECCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
PITIGTKYRWTATGWFDYLNMRVNGPEFHIRLMEGKEKYNDPRVKKVFEYWRQLLDRGYF
EEEECCEEEEEECCCEEEEEEEECCCEEEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCE
VDNAAAYSWQEGVRFMVKGEAAMYLMGQFILDAVPEEVAKDLDFFRFPIINEDVPIGEDT
ECCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PTDGFMIPKKAKNPELAKEFLKFLASREGQMIFIEKTGRIGVNNEIPMDSYPPLTQKGVK
CCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
MIQGTDALAQFYDRDTPPTMADKGMNGLMNFWAYPDQIDKILDNLERQRQMIFSEQE
HHCCHHHHHHHHCCCCCCCHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]