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The map label for this gene is hsp18 [H]

Identifier: 220932758

GI number: 220932758

Start: 2057428

End: 2057862

Strand: Reverse

Name: hsp18 [H]

Synonym: Hore_19240

Alternate gene names: 220932758

Gene position: 2057862-2057428 (Counterclockwise)

Preceding gene: 220932760

Following gene: 220932757

Centisome position: 79.82

GC content: 36.09

Gene sequence:

>435_bases
ATGTTTGATTTAATACCTTTCAGGCGCAGGGGCCGGAGAGAAATAATGGACTTAAGAGATTCCATTGATAGTTTTGTTTC
AGGCATTTTTGAGGACCTGGGAATGATGGGAACTGCGTTTAAAGCTGATGTTAAAGAGACGGATAATGAGTATATAATTC
AGGCTGAATTACCGGGATTTAGCAAGGAAAATATAAATGTTGAACTAGTTGATAATTATTTGACCATTGAGGCAAGTAAT
GATGAGATACTTGAAGAAGAAAGAGATAATTATCTGAGACGTGAAAGGAGAAGAGGTAGTTACAGGAGGAGCTTCTATAT
TGACAATGTAAACGAAGATGAGATTCAGGCACGGTATAATAACGGTATTCTGGAAATTAAACTCCCCAAAAAGAGTCCCG
GTAAAAAGAAAAAGAGGATAATAGATATAGATTAA

Upstream 100 bases:

>100_bases
TACTGGATTACAACACTTATTTGACTTTGACCTTCTTTGACTTTGACGGTATAATATTAACAGAAAAGGTTAAACATATT
GACTGGAGGTGACAGATAAT

Downstream 100 bases:

>100_bases
ATAAGACCTTTATGTAATAAGTATGGTCTTTATGCAAAAAAATTGTTATTATTTATGTTTGCTACTGTTACCCCTGTCTT
TTTTTGATATAATGTAGACA

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: HSP 18 [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MFDLIPFRRRGRREIMDLRDSIDSFVSGIFEDLGMMGTAFKADVKETDNEYIIQAELPGFSKENINVELVDNYLTIEASN
DEILEEERDNYLRRERRRGSYRRSFYIDNVNEDEIQARYNNGILEIKLPKKSPGKKKKRIIDID

Sequences:

>Translated_144_residues
MFDLIPFRRRGRREIMDLRDSIDSFVSGIFEDLGMMGTAFKADVKETDNEYIIQAELPGFSKENINVELVDNYLTIEASN
DEILEEERDNYLRRERRRGSYRRSFYIDNVNEDEIQARYNNGILEIKLPKKSPGKKKKRIIDID
>Mature_144_residues
MFDLIPFRRRGRREIMDLRDSIDSFVSGIFEDLGMMGTAFKADVKETDNEYIIQAELPGFSKENINVELVDNYLTIEASN
DEILEEERDNYLRRERRRGSYRRSFYIDNVNEDEIQARYNNGILEIKLPKKSPGKKKKRIIDID

Specific function: Probable chaperone [H]

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17045; Mature: 17045

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDLIPFRRRGRREIMDLRDSIDSFVSGIFEDLGMMGTAFKADVKETDNEYIIQAELPGF
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCC
SKENINVELVDNYLTIEASNDEILEEERDNYLRRERRRGSYRRSFYIDNVNEDEIQARYN
CCCCCEEEEEECEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCC
NGILEIKLPKKSPGKKKKRIIDID
CCEEEEEECCCCCCCCCCEEECCC
>Mature Secondary Structure
MFDLIPFRRRGRREIMDLRDSIDSFVSGIFEDLGMMGTAFKADVKETDNEYIIQAELPGF
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCC
SKENINVELVDNYLTIEASNDEILEEERDNYLRRERRRGSYRRSFYIDNVNEDEIQARYN
CCCCCEEEEEECEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCC
NGILEIKLPKKSPGKKKKRIIDID
CCEEEEEECCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501044; 11466286 [H]