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The map label for this gene is ycdX [C]

Identifier: 220932757

GI number: 220932757

Start: 2056540

End: 2057259

Strand: Reverse

Name: ycdX [C]

Synonym: Hore_19230

Alternate gene names: 220932757

Gene position: 2057259-2056540 (Counterclockwise)

Preceding gene: 220932758

Following gene: 220932756

Centisome position: 79.8

GC content: 41.81

Gene sequence:

>720_bases
ATGAAAATTGAGGCAGATCTACATACTCATACTGTAGCCAGTGGACATGCCTATAGTTCAGTTGGGGAAATTGCTAAAAG
TGCCCGGGATAAGGGGTTGAAACTTATTGCTATTACTGACCATGGTCCGGGTATGCCCGGAGGGCCCCATGAGTATTACT
TTGGAAACCTCAAGGCTATACCCGATGTGGTCCATGGGGTGAGGATCCTTAAAGGTATTGAGGCCAATATTTTAAATACA
GGTGAACTCGATCTTTCTGTAGAGAGGTTGGAAGAGCTTGATTTTGTAGCGGCTGGCATTCATGGAGATGTTGATTATAA
TAAAAAGAGCAGGTTAGAACATACTGAGGTTACTATAACAGCTATAAAAAATCCCTATGTTGACATGATAACCCACCCTG
CCAATTTGTATTTCCCCCTGGATCTGGAAGCTGTGGTTCAGGCAGCTGCTGAATATCAGGTTATCCTGGAGGTTAATGCC
AGTTCTCTGGAAGAGCCCCGACTGGGCAAACGGGGGAGTTATGAACTAACAATTCAATTATGCCGGCTTGCCAAAAAATA
TGGTGCCCCACTAAGCATGAACAGTGATGCCCATTTTTTTACACAGGTTGGAAATATTAAAAGTTTAAAACCAGTTATAG
AACAGGCAGAATTAACTGAAGAAGATATTTTAAATACAGACGCCAGAAAAGTTGAGTCCTTTATTTTAAACCGGAAATAA

Upstream 100 bases:

>100_bases
TACCCCTGTCTTTTTTTGATATAATGTAGACAGGGGTTTATTTATTGGTTTCTGTCAGACGGGGGAATAATACTTATAAG
TCTATAAGGAGGAATAATAA

Downstream 100 bases:

>100_bases
CTTTTATAGGGCCATGGATAAAATTTATTAGTGATTAATATAACCTTACCTGGGGTTTTAATATAACTACGGGTAAGGTT
TTTTTATTAATATATTTTAT

Product: biotin (acetyl-CoA carboxylase) synthetase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKIEADLHTHTVASGHAYSSVGEIAKSARDKGLKLIAITDHGPGMPGGPHEYYFGNLKAIPDVVHGVRILKGIEANILNT
GELDLSVERLEELDFVAAGIHGDVDYNKKSRLEHTEVTITAIKNPYVDMITHPANLYFPLDLEAVVQAAAEYQVILEVNA
SSLEEPRLGKRGSYELTIQLCRLAKKYGAPLSMNSDAHFFTQVGNIKSLKPVIEQAELTEEDILNTDARKVESFILNRK

Sequences:

>Translated_239_residues
MKIEADLHTHTVASGHAYSSVGEIAKSARDKGLKLIAITDHGPGMPGGPHEYYFGNLKAIPDVVHGVRILKGIEANILNT
GELDLSVERLEELDFVAAGIHGDVDYNKKSRLEHTEVTITAIKNPYVDMITHPANLYFPLDLEAVVQAAAEYQVILEVNA
SSLEEPRLGKRGSYELTIQLCRLAKKYGAPLSMNSDAHFFTQVGNIKSLKPVIEQAELTEEDILNTDARKVESFILNRK
>Mature_239_residues
MKIEADLHTHTVASGHAYSSVGEIAKSARDKGLKLIAITDHGPGMPGGPHEYYFGNLKAIPDVVHGVRILKGIEANILNT
GELDLSVERLEELDFVAAGIHGDVDYNKKSRLEHTEVTITAIKNPYVDMITHPANLYFPLDLEAVVQAAAEYQVILEVNA
SSLEEPRLGKRGSYELTIQLCRLAKKYGAPLSMNSDAHFFTQVGNIKSLKPVIEQAELTEEDILNTDARKVESFILNRK

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=234, Percent_Identity=38.034188034188, Blast_Score=150, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 26330; Mature: 26330

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEADLHTHTVASGHAYSSVGEIAKSARDKGLKLIAITDHGPGMPGGPHEYYFGNLKAI
CEEECCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEECCCHHH
PDVVHGVRILKGIEANILNTGELDLSVERLEELDFVAAGIHGDVDYNKKSRLEHTEVTIT
HHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHEECCCCCCCCCHHHCCCCCEEEEE
AIKNPYVDMITHPANLYFPLDLEAVVQAAAEYQVILEVNASSLEEPRLGKRGSYELTIQL
EECCCCEEEEECCCCEEECCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
CRLAKKYGAPLSMNSDAHFFTQVGNIKSLKPVIEQAELTEEDILNTDARKVESFILNRK
HHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKIEADLHTHTVASGHAYSSVGEIAKSARDKGLKLIAITDHGPGMPGGPHEYYFGNLKAI
CEEECCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEECCCHHH
PDVVHGVRILKGIEANILNTGELDLSVERLEELDFVAAGIHGDVDYNKKSRLEHTEVTIT
HHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHEECCCCCCCCCHHHCCCCCEEEEE
AIKNPYVDMITHPANLYFPLDLEAVVQAAAEYQVILEVNASSLEEPRLGKRGSYELTIQL
EECCCCEEEEECCCCEEECCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
CRLAKKYGAPLSMNSDAHFFTQVGNIKSLKPVIEQAELTEEDILNTDARKVESFILNRK
HHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA