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The map label for this gene is rnfA [H]

Identifier: 220932267

GI number: 220932267

Start: 1517652

End: 1518245

Strand: Reverse

Name: rnfA [H]

Synonym: Hore_14310

Alternate gene names: 220932267

Gene position: 1518245-1517652 (Counterclockwise)

Preceding gene: 220932268

Following gene: 220932266

Centisome position: 58.89

GC content: 39.56

Gene sequence:

>594_bases
ATGTCTGAAGAATTTACCCGGATACTTTTAATATTTATTAGTACTGTCCTCGTTAACAATTTTATACTGGTCCGGTTTTT
GGGTATCTGTCCTTTTTTAGGTGTTTCCCGTCATGTGGAGACTGCCTTCAGTATGGGACTGGCAACTACTTTTGTAATGA
CTATGACCGGGGCTGCAACCTGGTTAATTAATACCTATATCCTTGAAATGTTCAATTTGCCTTTTTTACAGTATGTCTCC
TTTATTATTGTTATAGCTTCTCTAGTACAGTTTGTTGAGATGTTTATAAAAAAGACCAGCCCGGTTTTATACAAAGCACT
GGGGATTTATCTACCCTTGATTACCACTAACTGTGCTATCCTCGGTCTGGCTTTATTAATTCCACTAAATGGCTACAATT
TTATTGAAAGTATTGTCTTCGGATTGAGTGCCGGTGTTGGCTTTACCCTGGCAATTGTTCTGATGGCGGGTCTCAGGGAA
ACACTGGAGTTTGCTGATGTACCGGAAGCTTTAAAAGGGGTTCCCATAACCCTGATTATTGCCGGGATTATGGCTATGGC
TTTTATGGGTTTTTCCGGTATGATTTCCATTTAA

Upstream 100 bases:

>100_bases
AATAATGGTTTTACCGGGTGGTGCTTTTATCAGTCTGGGAATATTAGTTGGAATCATGAATTATATAAGTAGACTCGGTA
ATAAAGGGGAGAGATAAGCA

Downstream 100 bases:

>100_bases
GTTTACGGAGGTGAAAGGATGGAACCAGTATATGTATATTCTCTCCTCAGCATGGGAGGCCTCGGGGCCTTACTGGCAGC
TGGTCTGGGTATAGCTTCAA

Product: RnfABCDGE type electron transport complex subunit A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSEEFTRILLIFISTVLVNNFILVRFLGICPFLGVSRHVETAFSMGLATTFVMTMTGAATWLINTYILEMFNLPFLQYVS
FIIVIASLVQFVEMFIKKTSPVLYKALGIYLPLITTNCAILGLALLIPLNGYNFIESIVFGLSAGVGFTLAIVLMAGLRE
TLEFADVPEALKGVPITLIIAGIMAMAFMGFSGMISI

Sequences:

>Translated_197_residues
MSEEFTRILLIFISTVLVNNFILVRFLGICPFLGVSRHVETAFSMGLATTFVMTMTGAATWLINTYILEMFNLPFLQYVS
FIIVIASLVQFVEMFIKKTSPVLYKALGIYLPLITTNCAILGLALLIPLNGYNFIESIVFGLSAGVGFTLAIVLMAGLRE
TLEFADVPEALKGVPITLIIAGIMAMAFMGFSGMISI
>Mature_196_residues
SEEFTRILLIFISTVLVNNFILVRFLGICPFLGVSRHVETAFSMGLATTFVMTMTGAATWLINTYILEMFNLPFLQYVSF
IIVIASLVQFVEMFIKKTSPVLYKALGIYLPLITTNCAILGLALLIPLNGYNFIESIVFGLSAGVGFTLAIVLMAGLRET
LEFADVPEALKGVPITLIIAGIMAMAFMGFSGMISI

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=58.8541666666667, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1787919, Length=155, Percent_Identity=32.9032258064516, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21543; Mature: 21412

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEFTRILLIFISTVLVNNFILVRFLGICPFLGVSRHVETAFSMGLATTFVMTMTGAAT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLINTYILEMFNLPFLQYVSFIIVIASLVQFVEMFIKKTSPVLYKALGIYLPLITTNCAI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LGLALLIPLNGYNFIESIVFGLSAGVGFTLAIVLMAGLRETLEFADVPEALKGVPITLII
HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH
AGIMAMAFMGFSGMISI
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SEEFTRILLIFISTVLVNNFILVRFLGICPFLGVSRHVETAFSMGLATTFVMTMTGAAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLINTYILEMFNLPFLQYVSFIIVIASLVQFVEMFIKKTSPVLYKALGIYLPLITTNCAI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LGLALLIPLNGYNFIESIVFGLSAGVGFTLAIVLMAGLRETLEFADVPEALKGVPITLII
HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH
AGIMAMAFMGFSGMISI
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA