Click here to switch to the map view.

The map label for this gene is rnfE [H]

Identifier: 220932268

GI number: 220932268

Start: 1518249

End: 1518848

Strand: Reverse

Name: rnfE [H]

Synonym: Hore_14320

Alternate gene names: 220932268

Gene position: 1518848-1518249 (Counterclockwise)

Preceding gene: 220932269

Following gene: 220932267

Centisome position: 58.91

GC content: 39.67

Gene sequence:

>600_bases
ATGTTAAAGGAATTTATCAAAGGTTTATGGAATGAAAATCCGATTTTCAGGCTTGTTATTGGAATGTGTCCTACCCTGGC
GGTTACCAATACAGCTGAAAATGGTCTGGCCATGGGACTGGCAACAACTTTTGTTTTACTGTCATCAGAAATTGTTATTT
CCCTGATAAAAAAGTTAATACCCAATGATGTTAGAATTCCAAGTTATATTTTGATTATAGCTACCTTTGTTACTTTTGTG
GATTACTTTCTTAAGGCTTTCTTTCCTACCATTGCGGCCTCATTAAGCTTATTTGTGCCATTAATTGTGGTTAACTGCTT
AATTCTGGGGAGGCAGGAGGCATTTGCTTCTAAAAACCCTCTTCACCTGTCTATTGCTGATGCTCTGGGAATGGGAGCCG
GTTTTACCTGGGCCCTGTTTGTTTTAAGTGTAGTCCGTGAGGCTCTGGGTATGGGGACTATCTTCGGTAATCCTATTTTT
GGGGCCGGCTATGAACCCATGATAATAATGGTTTTACCGGGTGGTGCTTTTATCAGTCTGGGAATATTAGTTGGAATCAT
GAATTATATAAGTAGACTCGGTAATAAAGGGGAGAGATAA

Upstream 100 bases:

>100_bases
AAGCTATTTCGGGGGCTACGATATCCTCCCAGAAGGTAACAAATATTGTAGAAAAGGCTGTAAAAGATATTAAGCGGTAT
TATGGGGGTGGGTCTGAATA

Downstream 100 bases:

>100_bases
GCAATGTCTGAAGAATTTACCCGGATACTTTTAATATTTATTAGTACTGTCCTCGTTAACAATTTTATACTGGTCCGGTT
TTTGGGTATCTGTCCTTTTT

Product: RnfABCDGE type electron transport complex subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MLKEFIKGLWNENPIFRLVIGMCPTLAVTNTAENGLAMGLATTFVLLSSEIVISLIKKLIPNDVRIPSYILIIATFVTFV
DYFLKAFFPTIAASLSLFVPLIVVNCLILGRQEAFASKNPLHLSIADALGMGAGFTWALFVLSVVREALGMGTIFGNPIF
GAGYEPMIIMVLPGGAFISLGILVGIMNYISRLGNKGER

Sequences:

>Translated_199_residues
MLKEFIKGLWNENPIFRLVIGMCPTLAVTNTAENGLAMGLATTFVLLSSEIVISLIKKLIPNDVRIPSYILIIATFVTFV
DYFLKAFFPTIAASLSLFVPLIVVNCLILGRQEAFASKNPLHLSIADALGMGAGFTWALFVLSVVREALGMGTIFGNPIF
GAGYEPMIIMVLPGGAFISLGILVGIMNYISRLGNKGER
>Mature_199_residues
MLKEFIKGLWNENPIFRLVIGMCPTLAVTNTAENGLAMGLATTFVLLSSEIVISLIKKLIPNDVRIPSYILIIATFVTFV
DYFLKAFFPTIAASLSLFVPLIVVNCLILGRQEAFASKNPLHLSIADALGMGAGFTWALFVLSVVREALGMGTIFGNPIF
GAGYEPMIIMVLPGGAFISLGILVGIMNYISRLGNKGER

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=192, Percent_Identity=40.1041666666667, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1787914, Length=143, Percent_Identity=32.1678321678322, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21503; Mature: 21503

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKEFIKGLWNENPIFRLVIGMCPTLAVTNTAENGLAMGLATTFVLLSSEIVISLIKKLI
CHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
PNDVRIPSYILIIATFVTFVDYFLKAFFPTIAASLSLFVPLIVVNCLILGRQEAFASKNP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
LHLSIADALGMGAGFTWALFVLSVVREALGMGTIFGNPIFGAGYEPMIIMVLPGGAFISL
CEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
GILVGIMNYISRLGNKGER
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLKEFIKGLWNENPIFRLVIGMCPTLAVTNTAENGLAMGLATTFVLLSSEIVISLIKKLI
CHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
PNDVRIPSYILIIATFVTFVDYFLKAFFPTIAASLSLFVPLIVVNCLILGRQEAFASKNP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
LHLSIADALGMGAGFTWALFVLSVVREALGMGTIFGNPIFGAGYEPMIIMVLPGGAFISL
CEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
GILVGIMNYISRLGNKGER
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA