| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is csxA [H]
Identifier: 220932148
GI number: 220932148
Start: 1407371
End: 1409884
Strand: Reverse
Name: csxA [H]
Synonym: Hore_13110
Alternate gene names: 220932148
Gene position: 1409884-1407371 (Counterclockwise)
Preceding gene: 220932149
Following gene: 220932147
Centisome position: 54.69
GC content: 31.9
Gene sequence:
>2514_bases TTGATAATAAAAGATAACTGGAAGATAGCTTACTTTGATGTCAATGAAATAAATAGTGCAGAAGTAGCCTCCAAAGATTA CATAGATCATTTCTGGATTCCTGCTACAGTTCCTGGTGATGTACATAGTACTTTAATAAATAGAAAAATAATTGACAATC CCTTTAAAGGTCATAATGATCAAAAATCCCGGTGGATAGAAAAAAAGGAATGGTGGTACAGGACTGAATTTGAATATAAG GAACATCTAAAGGATGATGAAAAAGTGGAGTTAATCTTCGAGGGATTAGATACCTTTGCCACTGTTTTTTTAAATGGTAG AGAACTGGGTAGTACTGATAACATGTTTATACCCCATATTTTTGAAGTTACTAACTTAATTAATTACGGGAAGAATGTTA TAGCCGTAAAATTTGATCCTATTAACAAGCATGTTAAAAATAAGAATAAAGACTTATGGTCTGGTTTTAGTAAAGAGAGG GTATGGGTTCGTAAAGCCCAGATGAATTTTGGATGGGATTGGGGTCCCCGGTTGGTGACAACCGGAATATGGAAAGAGGT TCATATCAAAAAGAGGAAATGTGCTAAAATAGATTCAGTATTTGTTAAAACAATTGATATATCTAATAATAATGCAAAAA TAGAAATTGATATTGATTTAGATAATTATACACATGCAAACAACTTGAAATTGGAGGTATCTCTTAAACATAAAAATAAA GAATTTAATTTAAAGAAAAAAGTTGAAAGAAATAAGGAAGTTATATACTTAAATGTAAAGGAACCTAAATTATGGTGGAC CCATGATTTGGGAGAACCGAACCTTTATAACCTTATTGTAAAGCTTTATAAAGGGGACATACTTATAGATGAATATAAAA AAGAAGTAGGAATTAGGTCTTTAAAGTTACAACATAAGGACGAGAATGGTAACAAAGTCTTTACTTTTCTCTTAAATGGA GTAAAGGTTTTTGCTAAAGGAGCAAACTGGATTCCCCCTGATAGTCTTTTTGGGGCAGTTGACGATAAAAGGTATAAAAA CTTGATTACTATGGCCCGTAAGGCCAATATGAATATGCTCCGGGTGTGGGGGGGAGGTATTTATGAAAAAGATGTTTTTT ATCAGGAATGTAACAGGCAAGGGATACTTGTCTGGCAGGATTTTATGTTTGCCTGTGCTCTTTACCCTGATTATAATAAA GATTTTATAAATAATGTCGAAAAGGAAATTATTTCAGTTGTAAAAAAATTACGTAATGACCCCTGTATAGCTTTATGGTG TGGAAATAATGAGAATGATTGGTTATATGAAAAGATGTATTCTGATGGTGATATTAAAACTGATTTTTATGGTAAGAAAA TATATCATGAATTATTACCTGGTTTATTATTAAACCTTGATCCAACCCGACCCTATTGGCCAAGCTCTCCATATGGTGGT AATGACCACAATGACCCCCGAGAAGGAGATACACATAACTGGTATGTTTGGCACGGACAGGTTGAGCCCCGTAAATTTGG AGAAAAAACAAAAATTGATTATAGTGTTGAAGGGGTTTCGTTTAAGAATTATAAAAAAGATATTTCTAGATTTGTAAGTG AGTTTGGAATGCATGCTTCTTCAAATGAGTACACCCTGAAAGATAATATTCCTAAAGGACAGTTTTACTGGGGTAGTCCT GAAATGGATTATAGAAATAAAGATTACCATCATCAAAAAGGAATATTATTAATGGAAGATTATACGGGAATACCAGATGA TATTGAAAAATATATTAAGTATTCTATGTTGACTCAGGCTGAAGGTCTTAAGTTTGGGGTAGAACACTATCGGAGAAGAA AACCGATGACCAGTGGCACCTTAATATGGCAGTTAAATGATTGTTGGCCTGGGACCAGCTGGTCTATGATAGATTATTAT TTATTACCTAAGGCATCTTATTATTATGCCAGAAATTTTTATAATCCTTATCTTATATCTTTGAATTATGAACCTAATAA AAAAATAGAATTGTGGGTTATAAATGATTTATTAGAAGATATTTATGATGAAATTCAATTAGATATTATAGATTTTTACG GTAAAATTATTTTTAGGGATAAAGTATCTGTAGATATAAAAGCCAATAGTTCACTGAAAATTAAAGAATATAGTATAGAT ATAGTTAAGGATGTTAAGCTAGAAGAAATTGCTTTTGCTCTTCGTTCAGGTAAGGGACACACCTCTAAAAATATTTATTT TCTTTCAGACCAAAAAAATTTAAATTTACCCTGTCCAAGGATTATTGTAGAAATAAATGAACAAAAAGATGAACTCAAGT TAAAGACTGATAAAATGGCTCGTTTTGTTACTTTGAATTTGCCAAGTAAAAATGTTGTCTTTAGTGATAATTATTTTGAT TTGCTACCAGGTGAGTTAAAGCAAATTAAACTAGTAAACAGGGGCAGGAAAAAGATACCCTACGAACAATTAACGGTATC AGATATAACCGGGACAGAAGCCATAATCAAGTAA
Upstream 100 bases:
>100_bases AATGGAAGAACATCTTATTAAGGGAATGAGTTCTGGGGCAGTTAAAGGATAAGTTAAATAAGGTTATAAGATTAATAACA TGGTGGAAGGAGTGATATTA
Downstream 100 bases:
>100_bases CTAGTAAGTAAAAATTATCTAAATGGAGGGGGTAATCTTGAAAAGTTTAGTTTTTTATGGACCAGGAAATGTAAAAATTG AAGATAAAGAGATTCCTAAA
Product: beta-mannosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MIIKDNWKIAYFDVNEINSAEVASKDYIDHFWIPATVPGDVHSTLINRKIIDNPFKGHNDQKSRWIEKKEWWYRTEFEYK EHLKDDEKVELIFEGLDTFATVFLNGRELGSTDNMFIPHIFEVTNLINYGKNVIAVKFDPINKHVKNKNKDLWSGFSKER VWVRKAQMNFGWDWGPRLVTTGIWKEVHIKKRKCAKIDSVFVKTIDISNNNAKIEIDIDLDNYTHANNLKLEVSLKHKNK EFNLKKKVERNKEVIYLNVKEPKLWWTHDLGEPNLYNLIVKLYKGDILIDEYKKEVGIRSLKLQHKDENGNKVFTFLLNG VKVFAKGANWIPPDSLFGAVDDKRYKNLITMARKANMNMLRVWGGGIYEKDVFYQECNRQGILVWQDFMFACALYPDYNK DFINNVEKEIISVVKKLRNDPCIALWCGNNENDWLYEKMYSDGDIKTDFYGKKIYHELLPGLLLNLDPTRPYWPSSPYGG NDHNDPREGDTHNWYVWHGQVEPRKFGEKTKIDYSVEGVSFKNYKKDISRFVSEFGMHASSNEYTLKDNIPKGQFYWGSP EMDYRNKDYHHQKGILLMEDYTGIPDDIEKYIKYSMLTQAEGLKFGVEHYRRRKPMTSGTLIWQLNDCWPGTSWSMIDYY LLPKASYYYARNFYNPYLISLNYEPNKKIELWVINDLLEDIYDEIQLDIIDFYGKIIFRDKVSVDIKANSSLKIKEYSID IVKDVKLEEIAFALRSGKGHTSKNIYFLSDQKNLNLPCPRIIVEINEQKDELKLKTDKMARFVTLNLPSKNVVFSDNYFD LLPGELKQIKLVNRGRKKIPYEQLTVSDITGTEAIIK
Sequences:
>Translated_837_residues MIIKDNWKIAYFDVNEINSAEVASKDYIDHFWIPATVPGDVHSTLINRKIIDNPFKGHNDQKSRWIEKKEWWYRTEFEYK EHLKDDEKVELIFEGLDTFATVFLNGRELGSTDNMFIPHIFEVTNLINYGKNVIAVKFDPINKHVKNKNKDLWSGFSKER VWVRKAQMNFGWDWGPRLVTTGIWKEVHIKKRKCAKIDSVFVKTIDISNNNAKIEIDIDLDNYTHANNLKLEVSLKHKNK EFNLKKKVERNKEVIYLNVKEPKLWWTHDLGEPNLYNLIVKLYKGDILIDEYKKEVGIRSLKLQHKDENGNKVFTFLLNG VKVFAKGANWIPPDSLFGAVDDKRYKNLITMARKANMNMLRVWGGGIYEKDVFYQECNRQGILVWQDFMFACALYPDYNK DFINNVEKEIISVVKKLRNDPCIALWCGNNENDWLYEKMYSDGDIKTDFYGKKIYHELLPGLLLNLDPTRPYWPSSPYGG NDHNDPREGDTHNWYVWHGQVEPRKFGEKTKIDYSVEGVSFKNYKKDISRFVSEFGMHASSNEYTLKDNIPKGQFYWGSP EMDYRNKDYHHQKGILLMEDYTGIPDDIEKYIKYSMLTQAEGLKFGVEHYRRRKPMTSGTLIWQLNDCWPGTSWSMIDYY LLPKASYYYARNFYNPYLISLNYEPNKKIELWVINDLLEDIYDEIQLDIIDFYGKIIFRDKVSVDIKANSSLKIKEYSID IVKDVKLEEIAFALRSGKGHTSKNIYFLSDQKNLNLPCPRIIVEINEQKDELKLKTDKMARFVTLNLPSKNVVFSDNYFD LLPGELKQIKLVNRGRKKIPYEQLTVSDITGTEAIIK >Mature_837_residues MIIKDNWKIAYFDVNEINSAEVASKDYIDHFWIPATVPGDVHSTLINRKIIDNPFKGHNDQKSRWIEKKEWWYRTEFEYK EHLKDDEKVELIFEGLDTFATVFLNGRELGSTDNMFIPHIFEVTNLINYGKNVIAVKFDPINKHVKNKNKDLWSGFSKER VWVRKAQMNFGWDWGPRLVTTGIWKEVHIKKRKCAKIDSVFVKTIDISNNNAKIEIDIDLDNYTHANNLKLEVSLKHKNK EFNLKKKVERNKEVIYLNVKEPKLWWTHDLGEPNLYNLIVKLYKGDILIDEYKKEVGIRSLKLQHKDENGNKVFTFLLNG VKVFAKGANWIPPDSLFGAVDDKRYKNLITMARKANMNMLRVWGGGIYEKDVFYQECNRQGILVWQDFMFACALYPDYNK DFINNVEKEIISVVKKLRNDPCIALWCGNNENDWLYEKMYSDGDIKTDFYGKKIYHELLPGLLLNLDPTRPYWPSSPYGG NDHNDPREGDTHNWYVWHGQVEPRKFGEKTKIDYSVEGVSFKNYKKDISRFVSEFGMHASSNEYTLKDNIPKGQFYWGSP EMDYRNKDYHHQKGILLMEDYTGIPDDIEKYIKYSMLTQAEGLKFGVEHYRRRKPMTSGTLIWQLNDCWPGTSWSMIDYY LLPKASYYYARNFYNPYLISLNYEPNKKIELWVINDLLEDIYDEIQLDIIDFYGKIIFRDKVSVDIKANSSLKIKEYSID IVKDVKLEEIAFALRSGKGHTSKNIYFLSDQKNLNLPCPRIIVEINEQKDELKLKTDKMARFVTLNLPSKNVVFSDNYFD LLPGELKQIKLVNRGRKKIPYEQLTVSDITGTEAIIK
Specific function: Hydrolyzes chitosan and chitooligosaccharides with retention of anomeric configuration. Has no beta-mannosidase activity [H]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI84798622, Length=823, Percent_Identity=28.4325637910085, Blast_Score=292, Evalue=1e-78, Organism=Caenorhabditis elegans, GI17550784, Length=885, Percent_Identity=27.1186440677966, Blast_Score=253, Evalue=2e-67, Organism=Drosophila melanogaster, GI24643838, Length=791, Percent_Identity=28.6978508217446, Blast_Score=232, Evalue=7e-61, Organism=Drosophila melanogaster, GI24643840, Length=711, Percent_Identity=28.8326300984529, Blast_Score=202, Evalue=7e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.165 [H]
Molecular weight: Translated: 98507; Mature: 98507
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIKDNWKIAYFDVNEINSAEVASKDYIDHFWIPATVPGDVHSTLINRKIIDNPFKGHND CEEECCCEEEEEECCCCCCCHHCCCCCHHHEEECCCCCCHHHHHHHHHHHHCCCCCCCCC QKSRWIEKKEWWYRTEFEYKEHLKDDEKVELIFEGLDTFATVFLNGRELGSTDNMFIPHI HHHHCCCHHHCEEECCCCHHHHCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHH FEVTNLINYGKNVIAVKFDPINKHVKNKNKDLWSGFSKERVWVRKAQMNFGWDWGPRLVT HHHHHHHHCCCCEEEEEECCCCHHHCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCHHEE TGIWKEVHIKKRKCAKIDSVFVKTIDISNNNAKIEIDIDLDNYTHANNLKLEVSLKHKNK CCCHHHHHHHHHHHHHHCEEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEECCCC EFNLKKKVERNKEVIYLNVKEPKLWWTHDLGEPNLYNLIVKLYKGDILIDEYKKEVGIRS CCCHHHHHCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCEEEEHHHHHCCCEE LKLQHKDENGNKVFTFLLNGVKVFAKGANWIPPDSLFGAVDDKRYKNLITMARKANMNML EEEEECCCCCCEEEEEEECCCEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEE RVWGGGIYEKDVFYQECNRQGILVWQDFMFACALYPDYNKDFINNVEKEIISVVKKLRND EEECCCCCCHHHHHHHHCCCCEEEEHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCC PCIALWCGNNENDWLYEKMYSDGDIKTDFYGKKIYHELLPGLLLNLDPTRPYWPSSPYGG CEEEEEECCCCCCCHHHHHCCCCCEEECHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCC NDHNDPREGDTHNWYVWHGQVEPRKFGEKTKIDYSVEGVSFKNYKKDISRFVSEFGMHAS CCCCCCCCCCCCCEEEEECCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC SNEYTLKDNIPKGQFYWGSPEMDYRNKDYHHQKGILLMEDYTGIPDDIEKYIKYSMLTQA CCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC EGLKFGVEHYRRRKPMTSGTLIWQLNDCWPGTSWSMIDYYLLPKASYYYARNFYNPYLIS CCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHCCCCCEEEE LNYEPNKKIELWVINDLLEDIYDEIQLDIIDFYGKIIFRDKVSVDIKANSSLKIKEYSID EECCCCCEEEEEEHHHHHHHHHHHHEEHHHHHCCEEEEECCEEEEEECCCCEEEEEEEEE IVKDVKLEEIAFALRSGKGHTSKNIYFLSDQKNLNLPCPRIIVEINEQKDELKLKTDKMA EECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCEE RFVTLNLPSKNVVFSDNYFDLLPGELKQIKLVNRGRKKIPYEQLTVSDITGTEAIIK EEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHHEEEECCCCCHHHCC >Mature Secondary Structure MIIKDNWKIAYFDVNEINSAEVASKDYIDHFWIPATVPGDVHSTLINRKIIDNPFKGHND CEEECCCEEEEEECCCCCCCHHCCCCCHHHEEECCCCCCHHHHHHHHHHHHCCCCCCCCC QKSRWIEKKEWWYRTEFEYKEHLKDDEKVELIFEGLDTFATVFLNGRELGSTDNMFIPHI HHHHCCCHHHCEEECCCCHHHHCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHH FEVTNLINYGKNVIAVKFDPINKHVKNKNKDLWSGFSKERVWVRKAQMNFGWDWGPRLVT HHHHHHHHCCCCEEEEEECCCCHHHCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCHHEE TGIWKEVHIKKRKCAKIDSVFVKTIDISNNNAKIEIDIDLDNYTHANNLKLEVSLKHKNK CCCHHHHHHHHHHHHHHCEEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEECCCC EFNLKKKVERNKEVIYLNVKEPKLWWTHDLGEPNLYNLIVKLYKGDILIDEYKKEVGIRS CCCHHHHHCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCEEEEHHHHHCCCEE LKLQHKDENGNKVFTFLLNGVKVFAKGANWIPPDSLFGAVDDKRYKNLITMARKANMNML EEEEECCCCCCEEEEEEECCCEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEE RVWGGGIYEKDVFYQECNRQGILVWQDFMFACALYPDYNKDFINNVEKEIISVVKKLRND EEECCCCCCHHHHHHHHCCCCEEEEHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCC PCIALWCGNNENDWLYEKMYSDGDIKTDFYGKKIYHELLPGLLLNLDPTRPYWPSSPYGG CEEEEEECCCCCCCHHHHHCCCCCEEECHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCC NDHNDPREGDTHNWYVWHGQVEPRKFGEKTKIDYSVEGVSFKNYKKDISRFVSEFGMHAS CCCCCCCCCCCCCEEEEECCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC SNEYTLKDNIPKGQFYWGSPEMDYRNKDYHHQKGILLMEDYTGIPDDIEKYIKYSMLTQA CCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC EGLKFGVEHYRRRKPMTSGTLIWQLNDCWPGTSWSMIDYYLLPKASYYYARNFYNPYLIS CCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHCCCCCEEEE LNYEPNKKIELWVINDLLEDIYDEIQLDIIDFYGKIIFRDKVSVDIKANSSLKIKEYSID EECCCCCEEEEEEHHHHHHHHHHHHEEHHHHHCCEEEEECCEEEEEECCCCEEEEEEEEE IVKDVKLEEIAFALRSGKGHTSKNIYFLSDQKNLNLPCPRIIVEINEQKDELKLKTDKMA EECCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCEE RFVTLNLPSKNVVFSDNYFDLLPGELKQIKLVNRGRKKIPYEQLTVSDITGTEAIIK EEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHHEEEECCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572948; 12692562 [H]