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The map label for this gene is ymdB [C]

Identifier: 220931652

GI number: 220931652

Start: 868250

End: 868816

Strand: Direct

Name: ymdB [C]

Synonym: Hore_08080

Alternate gene names: 220931652

Gene position: 868250-868816 (Clockwise)

Preceding gene: 220931650

Following gene: 220931653

Centisome position: 33.68

GC content: 39.86

Gene sequence:

>567_bases
ATGGTTAAAATTGAAATTGAAGGTTCACAATTAATCCTGGATACAGGTGATATTACTCAGGAAAGGGTTGAAGCCATTGT
TAATGCAGCTAATTCTTCACTGATGGGTGGAGGAGGTGTTGATGGGGCTATCCACCGGGCTGGTGGTCCTGATATACTTG
AGGAATGTAAGGAAATCAGGAAAAAAAAGGGTAAACTACCTCCAGGCCAGGCGGTAATAACTACCGGTGGAAAGCTTAAG
GCCAGATATGTAATCCATACCGTTGGTCCTGTCTGGCATGGTGGTCAAAAAAATGAAGGTGAAGTCTTAAAACAGGCATA
CAGGAACTGTTTAGACCTGGCGAGAAAAAACGGGATCAGGTCTATTGCCTTTCCATCCATCAGTACTGGAGCTTATAGAT
TTCCGGTTGACAGGGCAGCCGGTATTGCGATAGATACAATTTATACATATCTTTCAAAATACAAAGGGGTATTCGAGAAG
GTTAAAATGGTTTTATACACTGAAGCTGATTATAACATATATGTCTCCAAATATAATAAAATTATCCATAAATCTGATCA
ACAATAA

Upstream 100 bases:

>100_bases
ATATTCTCCTTTCTATTTGTCTATTAATTTATTTGATATTATTTTATATTATGAAATATAGATGTATAATGTTACTTCAA
AATAACCGGGGGAATTAGTC

Downstream 100 bases:

>100_bases
TGAGAATGGGTTAATATTAAAAACTTTTTGACAACTATATTATTTTATAATATAATTTAAGTAATAGAGGTTTAATAACC
AGGTCGGAGAGAGGAGAAAG

Product: Appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MVKIEIEGSQLILDTGDITQERVEAIVNAANSSLMGGGGVDGAIHRAGGPDILEECKEIRKKKGKLPPGQAVITTGGKLK
ARYVIHTVGPVWHGGQKNEGEVLKQAYRNCLDLARKNGIRSIAFPSISTGAYRFPVDRAAGIAIDTIYTYLSKYKGVFEK
VKMVLYTEADYNIYVSKYNKIIHKSDQQ

Sequences:

>Translated_188_residues
MVKIEIEGSQLILDTGDITQERVEAIVNAANSSLMGGGGVDGAIHRAGGPDILEECKEIRKKKGKLPPGQAVITTGGKLK
ARYVIHTVGPVWHGGQKNEGEVLKQAYRNCLDLARKNGIRSIAFPSISTGAYRFPVDRAAGIAIDTIYTYLSKYKGVFEK
VKMVLYTEADYNIYVSKYNKIIHKSDQQ
>Mature_188_residues
MVKIEIEGSQLILDTGDITQERVEAIVNAANSSLMGGGGVDGAIHRAGGPDILEECKEIRKKKGKLPPGQAVITTGGKLK
ARYVIHTVGPVWHGGQKNEGEVLKQAYRNCLDLARKNGIRSIAFPSISTGAYRFPVDRAAGIAIDTIYTYLSKYKGVFEK
VKMVLYTEADYNIYVSKYNKIIHKSDQQ

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=168, Percent_Identity=47.0238095238095, Blast_Score=147, Evalue=4e-36,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=43.1952662721894, Blast_Score=141, Evalue=3e-34,
Organism=Homo sapiens, GI154813199, Length=141, Percent_Identity=39.0070921985816, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI20336746, Length=175, Percent_Identity=34.8571428571429, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI93141018, Length=160, Percent_Identity=35.625, Blast_Score=95, Evalue=4e-20,
Organism=Homo sapiens, GI93141020, Length=160, Percent_Identity=35.625, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI4758496, Length=160, Percent_Identity=35.625, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI226371718, Length=139, Percent_Identity=34.5323741007194, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI226371716, Length=139, Percent_Identity=34.5323741007194, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226371714, Length=139, Percent_Identity=34.5323741007194, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226371712, Length=139, Percent_Identity=34.5323741007194, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226371710, Length=139, Percent_Identity=34.5323741007194, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226371706, Length=139, Percent_Identity=34.5323741007194, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI8923920, Length=178, Percent_Identity=30.8988764044944, Blast_Score=87, Evalue=9e-18,
Organism=Homo sapiens, GI207450721, Length=153, Percent_Identity=32.0261437908497, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI8923143, Length=153, Percent_Identity=32.0261437908497, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI165377137, Length=168, Percent_Identity=27.3809523809524, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1787283, Length=159, Percent_Identity=50.9433962264151, Blast_Score=170, Evalue=7e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=168, Percent_Identity=45.8333333333333, Blast_Score=120, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24586353, Length=147, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20614; Mature: 20614

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKIEIEGSQLILDTGDITQERVEAIVNAANSSLMGGGGVDGAIHRAGGPDILEECKEIR
CEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHH
KKKGKLPPGQAVITTGGKLKARYVIHTVGPVWHGGQKNEGEVLKQAYRNCLDLARKNGIR
HHCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
SIAFPSISTGAYRFPVDRAAGIAIDTIYTYLSKYKGVFEKVKMVLYTEADYNIYVSKYNK
EEECCCCCCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHH
IIHKSDQQ
HHHCCCCC
>Mature Secondary Structure
MVKIEIEGSQLILDTGDITQERVEAIVNAANSSLMGGGGVDGAIHRAGGPDILEECKEIR
CEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHH
KKKGKLPPGQAVITTGGKLKARYVIHTVGPVWHGGQKNEGEVLKQAYRNCLDLARKNGIR
HHCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
SIAFPSISTGAYRFPVDRAAGIAIDTIYTYLSKYKGVFEKVKMVLYTEADYNIYVSKYNK
EEECCCCCCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHH
IIHKSDQQ
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA