Definition Halothermothrix orenii H 168 chromosome, complete genome.
Accession NC_011899
Length 2,578,146

Click here to switch to the map view.

The map label for this gene is 220931366

Identifier: 220931366

GI number: 220931366

Start: 569142

End: 569765

Strand: Reverse

Name: 220931366

Synonym: Hore_05210

Alternate gene names: NA

Gene position: 569765-569142 (Counterclockwise)

Preceding gene: 220931367

Following gene: 220931361

Centisome position: 22.1

GC content: 41.19

Gene sequence:

>624_bases
TTGGACTTTCCCTTTTTCAGAAATCAGAGCTATATAAGGGTTTTACACGCTTCACCGGGAGCTCCGGCTGTTGATGTATA
TGCCGATAATATCAAGATTGCTTCTAATTTAAGCTACAGGAATTTAACCAGTTATATAAGGGTTAGACCCGGACAATATA
ATGTGATAGTCTATCCAGCTGGTTCAAGGCGAAACCCTGTTTATCGAGAACGTATATATGTACCACCCGGGTCTATTTCA
ACCGTTGCTGCCACTGGGCAGGTCGGAGAAAATTTTGACCTGTTAGTAATACCTGACACGAACTCACGACCACGCCAGGA
TACAACTTATCTCAGAGTTGTCCACCTGTCACCTAATGCCCCAGCTGTTAATGCCCGTATAGATAATAGAATCCTGGCAA
GAAACATTAGTTATCAGGATATAACCCGTTATGTTCCCCTGGACCCCGGAACTTATACTTTAAGTATATTTAATGCTCAA
ACTAACCAGAGGGTTGTTAGAAACCGCAACCTGGTTTTACAGCCCGGTTTTTATTATACATCTTATATACTGGGGCTGGT
TGACGGTAATGTTCCACTGGAAGTAATTACTGTAATTGATAGAATTTATGAACTTGTTGTCTAA

Upstream 100 bases:

>100_bases
CAGGATATCCTGCCATTTTTTATACTTAAAAAACTTAAAGTGACAAAAATCAACTTTACTAAATAATATATACTAAAACT
GACAAAGTGAGGTGAAACAA

Downstream 100 bases:

>100_bases
ATTAAATCAGGGAGGTTATATAACCTCCCTTTTCCTTACCCTGAACCTTGTCTATTTTATTATATTAAACCTTAATCTTC
ACCATCTTTGATTATTTACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDFPFFRNQSYIRVLHASPGAPAVDVYADNIKIASNLSYRNLTSYIRVRPGQYNVIVYPAGSRRNPVYRERIYVPPGSIS
TVAATGQVGENFDLLVIPDTNSRPRQDTTYLRVVHLSPNAPAVNARIDNRILARNISYQDITRYVPLDPGTYTLSIFNAQ
TNQRVVRNRNLVLQPGFYYTSYILGLVDGNVPLEVITVIDRIYELVV

Sequences:

>Translated_207_residues
MDFPFFRNQSYIRVLHASPGAPAVDVYADNIKIASNLSYRNLTSYIRVRPGQYNVIVYPAGSRRNPVYRERIYVPPGSIS
TVAATGQVGENFDLLVIPDTNSRPRQDTTYLRVVHLSPNAPAVNARIDNRILARNISYQDITRYVPLDPGTYTLSIFNAQ
TNQRVVRNRNLVLQPGFYYTSYILGLVDGNVPLEVITVIDRIYELVV
>Mature_207_residues
MDFPFFRNQSYIRVLHASPGAPAVDVYADNIKIASNLSYRNLTSYIRVRPGQYNVIVYPAGSRRNPVYRERIYVPPGSIS
TVAATGQVGENFDLLVIPDTNSRPRQDTTYLRVVHLSPNAPAVNARIDNRILARNISYQDITRYVPLDPGTYTLSIFNAQ
TNQRVVRNRNLVLQPGFYYTSYILGLVDGNVPLEVITVIDRIYELVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23424; Mature: 23424

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFPFFRNQSYIRVLHASPGAPAVDVYADNIKIASNLSYRNLTSYIRVRPGQYNVIVYPA
CCCCCCCCCCEEEEEECCCCCCEEEEEECCEEEECCCCHHCCEEEEEECCCCEEEEEEEC
GSRRNPVYRERIYVPPGSISTVAATGQVGENFDLLVIPDTNSRPRQDTTYLRVVHLSPNA
CCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCC
PAVNARIDNRILARNISYQDITRYVPLDPGTYTLSIFNAQTNQRVVRNRNLVLQPGFYYT
CEEEEEECCEEEEECCCHHHHEEEECCCCCEEEEEEEECCCCCHHHHCCCEEEECCHHHE
SYILGLVDGNVPLEVITVIDRIYELVV
EEEEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDFPFFRNQSYIRVLHASPGAPAVDVYADNIKIASNLSYRNLTSYIRVRPGQYNVIVYPA
CCCCCCCCCCEEEEEECCCCCCEEEEEECCEEEECCCCHHCCEEEEEECCCCEEEEEEEC
GSRRNPVYRERIYVPPGSISTVAATGQVGENFDLLVIPDTNSRPRQDTTYLRVVHLSPNA
CCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCC
PAVNARIDNRILARNISYQDITRYVPLDPGTYTLSIFNAQTNQRVVRNRNLVLQPGFYYT
CEEEEEECCEEEEECCCHHHHEEEECCCCCEEEEEEEECCCCCHHHHCCCEEEECCHHHE
SYILGLVDGNVPLEVITVIDRIYELVV
EEEEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA