Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 220931357

GI number: 220931357

Start: 558227

End: 559681

Strand: Reverse

Name: ybgF [H]

Synonym: Hore_05120

Alternate gene names: 220931357

Gene position: 559681-558227 (Counterclockwise)

Preceding gene: 220931359

Following gene: 220931356

Centisome position: 21.71

GC content: 45.43

Gene sequence:

>1455_bases
ATGCCCGAAAATAAACACGGACTAACATCTTCCCGGCTAACCCTGCTTGCTCTGGGAACAGTAGTCGGGGGCTCCTTTTT
TCTGGGGTCAGCTATTGCCATTAAAAATGCAGGACCCTCAATCATAATCTCCTACCTTCTGGGTGGCGCCCTGGTCTATG
TAATTTTATATTCCCTGTCTGAAATGACTACCAGTGATCCCACAGCCGGTTCCTTCCGAAACTACTGTGAGAATATGTAT
GGACCCATGGCTGGGTTTGTAGTAGGCTGGTTATACTGGACAGGTCTCGTTCTGGCCATGTCCAGCGAAGCCATTGCTGT
TTCGGCTTTTTTAAAAAAATGGTTTCCCCAGGTATCCCTCCCTGCTTTAGGAGCAGTAACTATTATCGCAGTTACCATTA
TAAATTTACTCGGAGTTGAAAAACTGAGCACCCTGGAAAGTGGCCTCGCTGTTGTTAAGTTGCTGGCTATTGTCGGTTTC
ATTGTCCTGGCCTTATTTCTGGTTGCCGGTTTATTACCCGGCCGTTCCCCCATCGGGGCCGGAGAATTACTCAATGAACC
CCTGTTTCCCCGGGGGCTGGCCGGAATTGCTGGTAGTATGCTCATAGTCATATTTACCTATGCTAGATTTGAAATTATTG
GACTTGCTTCCAGTGAGACCATAAATCCCCATAAAACAATTCCCAGGGCGATAACATATACCGTAGCAGGACTGGTCGGT
TTATATACCCTGGCCATAATCTTTTTGCTCCCCCTTATTCCCACTGCCCGGTTATCGGAAGAAGTAAGCCCCCTGGTCGC
AGCCCTGACAAGAAGTGGCCTGGGATGGGCCGGTGATGTTATAAATATCGTCCTCATAACAGCTATTTTATCAACTATGT
TAGCTGCTACCTTCGGTATTGCAAGGATGCTTCGTTCACTGGCCGATGAAGGCCATGCCCCTGGTTTTTTAAGGGATAAG
GGTGATATCCCTTACCGTGGGATTATCTTTTCCGGGCTTTCTATGCTAACAGCCCTGGTTTTAGGTTTTATTCTGCCCCG
GAGGATTTACCTCTTTCTTGTCAGTTCGGGTGGATTTGCCTTCCTCTTTGTCTACCTGGTTATTCTGGCTACCCACTATA
AATTCAGGAAAATATACGGATGTCCCGATGAAGGTAAATGCCGTGTACCCGCTTACCCTTACACTACTATTACCTCCTCG
ATAGGACTTTTATTAATCATACTAAGCATGCCTTTAATCCCGGGGCAGGGCTCAGGATTATATGCCGGGCTGATTCTTGT
TTCCGTATATACAGGAATATATATAATAAAAGAGCCTGAGAAGGCCCGACAGTTTTTTACCGGAATTAACTTAAACTTAT
CACATAAAAATGTATTGACTGAGTTCTCAGATGAAATAATACCTGAAGATAAATTAAATGGGAAGGAAGATAGCGGGGGG
AAAAACAATGAATGA

Upstream 100 bases:

>100_bases
ACCAGTCTTAAATTATTTTGAATAAAATTGTCAATATCTTAAATAATACTAATAGCCCCTTTATTATATAGCCCTTTAAT
TATAGAGGAGGATACAAACT

Downstream 100 bases:

>100_bases
CAGTAGTACCTGTAATGACAATAATATTAACAATTATAAAATAATCAGGTTAAAACATAAATCTAATTTGCACTCTTCAG
AAATTAAAGCCATTGACTAT

Product: amino acid permease-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MPENKHGLTSSRLTLLALGTVVGGSFFLGSAIAIKNAGPSIIISYLLGGALVYVILYSLSEMTTSDPTAGSFRNYCENMY
GPMAGFVVGWLYWTGLVLAMSSEAIAVSAFLKKWFPQVSLPALGAVTIIAVTIINLLGVEKLSTLESGLAVVKLLAIVGF
IVLALFLVAGLLPGRSPIGAGELLNEPLFPRGLAGIAGSMLIVIFTYARFEIIGLASSETINPHKTIPRAITYTVAGLVG
LYTLAIIFLLPLIPTARLSEEVSPLVAALTRSGLGWAGDVINIVLITAILSTMLAATFGIARMLRSLADEGHAPGFLRDK
GDIPYRGIIFSGLSMLTALVLGFILPRRIYLFLVSSGGFAFLFVYLVILATHYKFRKIYGCPDEGKCRVPAYPYTTITSS
IGLLLIILSMPLIPGQGSGLYAGLILVSVYTGIYIIKEPEKARQFFTGINLNLSHKNVLTEFSDEIIPEDKLNGKEDSGG
KNNE

Sequences:

>Translated_484_residues
MPENKHGLTSSRLTLLALGTVVGGSFFLGSAIAIKNAGPSIIISYLLGGALVYVILYSLSEMTTSDPTAGSFRNYCENMY
GPMAGFVVGWLYWTGLVLAMSSEAIAVSAFLKKWFPQVSLPALGAVTIIAVTIINLLGVEKLSTLESGLAVVKLLAIVGF
IVLALFLVAGLLPGRSPIGAGELLNEPLFPRGLAGIAGSMLIVIFTYARFEIIGLASSETINPHKTIPRAITYTVAGLVG
LYTLAIIFLLPLIPTARLSEEVSPLVAALTRSGLGWAGDVINIVLITAILSTMLAATFGIARMLRSLADEGHAPGFLRDK
GDIPYRGIIFSGLSMLTALVLGFILPRRIYLFLVSSGGFAFLFVYLVILATHYKFRKIYGCPDEGKCRVPAYPYTTITSS
IGLLLIILSMPLIPGQGSGLYAGLILVSVYTGIYIIKEPEKARQFFTGINLNLSHKNVLTEFSDEIIPEDKLNGKEDSGG
KNNE
>Mature_483_residues
PENKHGLTSSRLTLLALGTVVGGSFFLGSAIAIKNAGPSIIISYLLGGALVYVILYSLSEMTTSDPTAGSFRNYCENMYG
PMAGFVVGWLYWTGLVLAMSSEAIAVSAFLKKWFPQVSLPALGAVTIIAVTIINLLGVEKLSTLESGLAVVKLLAIVGFI
VLALFLVAGLLPGRSPIGAGELLNEPLFPRGLAGIAGSMLIVIFTYARFEIIGLASSETINPHKTIPRAITYTVAGLVGL
YTLAIIFLLPLIPTARLSEEVSPLVAALTRSGLGWAGDVINIVLITAILSTMLAATFGIARMLRSLADEGHAPGFLRDKG
DIPYRGIIFSGLSMLTALVLGFILPRRIYLFLVSSGGFAFLFVYLVILATHYKFRKIYGCPDEGKCRVPAYPYTTITSSI
GLLLIILSMPLIPGQGSGLYAGLILVSVYTGIYIIKEPEKARQFFTGINLNLSHKNVLTEFSDEIIPEDKLNGKEDSGGK
NNE

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI181337167, Length=327, Percent_Identity=24.1590214067278, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI110347453, Length=329, Percent_Identity=25.2279635258359, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87081708, Length=452, Percent_Identity=30.0884955752212, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI1786302, Length=422, Percent_Identity=29.1469194312796, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1790653, Length=382, Percent_Identity=30.8900523560209, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI1789017, Length=395, Percent_Identity=31.1392405063291, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1786602, Length=432, Percent_Identity=30.787037037037, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1786789, Length=413, Percent_Identity=27.1186440677966, Blast_Score=175, Evalue=7e-45,
Organism=Escherichia coli, GI1788480, Length=394, Percent_Identity=28.6802030456853, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI87081915, Length=409, Percent_Identity=27.1393643031785, Blast_Score=165, Evalue=8e-42,
Organism=Escherichia coli, GI48994972, Length=442, Percent_Identity=26.9230769230769, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI2367353, Length=401, Percent_Identity=24.9376558603491, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081869, Length=347, Percent_Identity=26.2247838616715, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17531343, Length=399, Percent_Identity=24.0601503759398, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17532491, Length=366, Percent_Identity=23.224043715847, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17533459, Length=367, Percent_Identity=21.7983651226158, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320772, Length=399, Percent_Identity=28.0701754385965, Blast_Score=140, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6324061, Length=399, Percent_Identity=27.8195488721804, Blast_Score=140, Evalue=5e-34,
Organism=Saccharomyces cerevisiae, GI6324059, Length=406, Percent_Identity=26.6009852216749, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321053, Length=483, Percent_Identity=24.223602484472, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6320717, Length=395, Percent_Identity=26.3291139240506, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6324553, Length=382, Percent_Identity=26.4397905759162, Blast_Score=117, Evalue=6e-27,
Organism=Saccharomyces cerevisiae, GI6321629, Length=441, Percent_Identity=23.1292517006803, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6319824, Length=506, Percent_Identity=22.5296442687747, Blast_Score=111, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6320251, Length=397, Percent_Identity=24.4332493702771, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322892, Length=398, Percent_Identity=24.3718592964824, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6324924, Length=364, Percent_Identity=26.6483516483516, Blast_Score=102, Evalue=9e-23,
Organism=Saccharomyces cerevisiae, GI6319542, Length=390, Percent_Identity=23.8461538461538, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6319543, Length=405, Percent_Identity=25.9259259259259, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6324990, Length=355, Percent_Identity=25.0704225352113, Blast_Score=91, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6322967, Length=514, Percent_Identity=20.4280155642023, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6319608, Length=441, Percent_Identity=23.1292517006803, Blast_Score=80, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6324981, Length=384, Percent_Identity=23.6979166666667, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24666159, Length=357, Percent_Identity=24.6498599439776, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221512776, Length=357, Percent_Identity=24.6498599439776, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24667468, Length=368, Percent_Identity=23.6413043478261, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51721; Mature: 51590

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPENKHGLTSSRLTLLALGTVVGGSFFLGSAIAIKNAGPSIIISYLLGGALVYVILYSLS
CCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
EMTTSDPTAGSFRNYCENMYGPMAGFVVGWLYWTGLVLAMSSEAIAVSAFLKKWFPQVSL
HHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
PALGAVTIIAVTIINLLGVEKLSTLESGLAVVKLLAIVGFIVLALFLVAGLLPGRSPIGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GELLNEPLFPRGLAGIAGSMLIVIFTYARFEIIGLASSETINPHKTIPRAITYTVAGLVG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LYTLAIIFLLPLIPTARLSEEVSPLVAALTRSGLGWAGDVINIVLITAILSTMLAATFGI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARMLRSLADEGHAPGFLRDKGDIPYRGIIFSGLSMLTALVLGFILPRRIYLFLVSSGGFA
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHH
FLFVYLVILATHYKFRKIYGCPDEGKCRVPAYPYTTITSSIGLLLIILSMPLIPGQGSGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
YAGLILVSVYTGIYIIKEPEKARQFFTGINLNLSHKNVLTEFSDEIIPEDKLNGKEDSGG
HHHHHHHHHHHCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
KNNE
CCCC
>Mature Secondary Structure 
PENKHGLTSSRLTLLALGTVVGGSFFLGSAIAIKNAGPSIIISYLLGGALVYVILYSLS
CCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
EMTTSDPTAGSFRNYCENMYGPMAGFVVGWLYWTGLVLAMSSEAIAVSAFLKKWFPQVSL
HHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
PALGAVTIIAVTIINLLGVEKLSTLESGLAVVKLLAIVGFIVLALFLVAGLLPGRSPIGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GELLNEPLFPRGLAGIAGSMLIVIFTYARFEIIGLASSETINPHKTIPRAITYTVAGLVG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LYTLAIIFLLPLIPTARLSEEVSPLVAALTRSGLGWAGDVINIVLITAILSTMLAATFGI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARMLRSLADEGHAPGFLRDKGDIPYRGIIFSGLSMLTALVLGFILPRRIYLFLVSSGGFA
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHH
FLFVYLVILATHYKFRKIYGCPDEGKCRVPAYPYTTITSSIGLLLIILSMPLIPGQGSGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
YAGLILVSVYTGIYIIKEPEKARQFFTGINLNLSHKNVLTEFSDEIIPEDKLNGKEDSGG
HHHHHHHHHHHCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
KNNE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]