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The map label for this gene is kaiC [H]

Identifier: 220918233

GI number: 220918233

Start: 3465873

End: 3467369

Strand: Reverse

Name: kaiC [H]

Synonym: A2cp1_3136

Alternate gene names: 220918233

Gene position: 3467369-3465873 (Counterclockwise)

Preceding gene: 220918234

Following gene: 220918232

Centisome position: 68.94

GC content: 73.08

Gene sequence:

>1497_bases
ATGTCGACGGCCAACGGACCCCTCACCCCGCGTGCCGCGACCGGCATCCCCGGCCTGGACGACGTGCTGGGCGGCGGCTT
CCCGCGGCGCCGCATCCACCTGCTCCAGGGATCACCGGGCGCCGGCAAGACCACGCTCTCGCTCCAGTTCCTGATGGAGG
GCGTGCGCCAGGGCGAGTCCTGCCTCTACATCGCCATGTCCGAGTCGCGCGAGGAGGTCGCGAGCGTCGCGGCCTCGCAC
GGCTGGGACCTCGGCGGCGTCGCGGTGTTCGACGCGTCGGAGCTGGACGGCAGCGAGGAGGAGAACACCATCCTCGAGCC
CGCCGAGGTGGAGCTCGGGGAGCGGATGCGGGCGATCCTCACCGAGGTGGAGCGCGTGCAGCCGAACCGGGTGGTGCTCG
ACTCCTGCACCGAGCTGCGCCTGCTGGCCCAGACGCCCATCCGCTACCGCCGCCAGCTGCTCGCGCTGAAGCGCCAGCTC
GTGGAGAAGGACCGGACGGTGCTCCTGCTCGACAACCCGTCCCCCGAGTCGCCGGACGTCCTGGTGCAGAGCCTGGCGCA
CGGCGTGGTGGTGCTCGAGCAGCTGAACCCGGAGTACGGCGCCGAGCGGCGGCGCCTGCGCGTGCTGAAGATGCGCGCCG
CCTCCTACCGCGGGGGATACCACGACTTCGCGATCCGCACCGGCGGACTGCGGGTGTTCCCGCGGCTGGTCGCTGCCGAG
CACCGCGCCGGTGCCACCCAGCCCGAGCGCTGCCTGACCGGCCTCGAGCCGCTCGATCGCATGCTGGGCGGCGGCCTCGA
CCGCGGGACGAGCACCCTGGTCGTCGGCCCGGCCGGCGCGGGGAAGTCCACCCTCGCTACCCAGATCGTCGAGGCGGCCG
CGCGCCGGGGCGAAACCGTCGCGGTGTTCGCGTTCGACGAGCCGCGCGCCACGCTCCTGGCGCGGGCGCGCGCGACCGGC
CTGGACCTCGCCCCCTACGAGGAGGCCGGGACGGTGCAGGTCACGCAGGTCGATCCGGCCGAGATCTCCGCCGGCGAGCT
GATCCACCAGGTCCGCACGGCGGTCGAGCGCGGCGCGCGGATGGTGCTGATCGACAGCTTGAACGGCCTGCTCCAGGCGA
TGCCGAGCGAGGGCTCGCTGGTGCTGCAGGTGCACGAGATGCTGAGCTTCCTCGCCGAGAAGCACGTGGTCACCCTGCTC
ACGATGGCGCAGCACGGGATCATCGGCGAGATGCTCGCCCCCGCCGACGTGACCTACCTCGCGGACACGGTCGTGCTCCT
GCGCTACTTCGAGGCCGGCGGCGGCGTTCGGAAGGCGATCTCGGTGGTGAAGAAGCGCCTGGGGGCACACGAGTCCACCA
TCCGCGAGTACCTGCCCACGGCGACCGGGCTGCGGCTCGGTGCCCCGCTGACGGCGTTCCGGGGCGTGCTCACCGGCGTG
CCCGAGTTCGAGCCCGGCGCCGCCGGCGCGCAGCTCCTGCCCGTCCAGTCTCCATGA

Upstream 100 bases:

>100_bases
GGGGGCGGGCGGGCCCTCGCTGCCCGATCGGGCATCGTGCGTCGGGTAGACTCCGGGACCAGCGTACCGCACGCGAGAGG
CCCACCCACCAGGAGGACGC

Downstream 100 bases:

>100_bases
GCGATCTGCACCGGTCCGAGCGCGTCCTGGTCCTCGCGCCCACCGGGCGCGACGCGGAGGTCGCGTCGAACGTGCTGCGG
ACCGCGGGGCTGTCGGTCAT

Product: circadian clock protein, KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MSTANGPLTPRAATGIPGLDDVLGGGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGESCLYIAMSESREEVASVAASH
GWDLGGVAVFDASELDGSEEENTILEPAEVELGERMRAILTEVERVQPNRVVLDSCTELRLLAQTPIRYRRQLLALKRQL
VEKDRTVLLLDNPSPESPDVLVQSLAHGVVVLEQLNPEYGAERRRLRVLKMRAASYRGGYHDFAIRTGGLRVFPRLVAAE
HRAGATQPERCLTGLEPLDRMLGGGLDRGTSTLVVGPAGAGKSTLATQIVEAAARRGETVAVFAFDEPRATLLARARATG
LDLAPYEEAGTVQVTQVDPAEISAGELIHQVRTAVERGARMVLIDSLNGLLQAMPSEGSLVLQVHEMLSFLAEKHVVTLL
TMAQHGIIGEMLAPADVTYLADTVVLLRYFEAGGGVRKAISVVKKRLGAHESTIREYLPTATGLRLGAPLTAFRGVLTGV
PEFEPGAAGAQLLPVQSP

Sequences:

>Translated_498_residues
MSTANGPLTPRAATGIPGLDDVLGGGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGESCLYIAMSESREEVASVAASH
GWDLGGVAVFDASELDGSEEENTILEPAEVELGERMRAILTEVERVQPNRVVLDSCTELRLLAQTPIRYRRQLLALKRQL
VEKDRTVLLLDNPSPESPDVLVQSLAHGVVVLEQLNPEYGAERRRLRVLKMRAASYRGGYHDFAIRTGGLRVFPRLVAAE
HRAGATQPERCLTGLEPLDRMLGGGLDRGTSTLVVGPAGAGKSTLATQIVEAAARRGETVAVFAFDEPRATLLARARATG
LDLAPYEEAGTVQVTQVDPAEISAGELIHQVRTAVERGARMVLIDSLNGLLQAMPSEGSLVLQVHEMLSFLAEKHVVTLL
TMAQHGIIGEMLAPADVTYLADTVVLLRYFEAGGGVRKAISVVKKRLGAHESTIREYLPTATGLRLGAPLTAFRGVLTGV
PEFEPGAAGAQLLPVQSP
>Mature_497_residues
STANGPLTPRAATGIPGLDDVLGGGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGESCLYIAMSESREEVASVAASHG
WDLGGVAVFDASELDGSEEENTILEPAEVELGERMRAILTEVERVQPNRVVLDSCTELRLLAQTPIRYRRQLLALKRQLV
EKDRTVLLLDNPSPESPDVLVQSLAHGVVVLEQLNPEYGAERRRLRVLKMRAASYRGGYHDFAIRTGGLRVFPRLVAAEH
RAGATQPERCLTGLEPLDRMLGGGLDRGTSTLVVGPAGAGKSTLATQIVEAAARRGETVAVFAFDEPRATLLARARATGL
DLAPYEEAGTVQVTQVDPAEISAGELIHQVRTAVERGARMVLIDSLNGLLQAMPSEGSLVLQVHEMLSFLAEKHVVTLLT
MAQHGIIGEMLAPADVTYLADTVVLLRYFEAGGGVRKAISVVKKRLGAHESTIREYLPTATGLRLGAPLTAFRGVLTGVP
EFEPGAAGAQLLPVQSP

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 53378; Mature: 53247

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTANGPLTPRAATGIPGLDDVLGGGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGES
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
CLYIAMSESREEVASVAASHGWDLGGVAVFDASELDGSEEENTILEPAEVELGERMRAIL
EEEEEECCCHHHHHHHHHHCCCCCCCEEEEECHHCCCCCCCCCCCCCHHHHHHHHHHHHH
TEVERVQPNRVVLDSCTELRLLAQTPIRYRRQLLALKRQLVEKDRTVLLLDNPSPESPDV
HHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
LVQSLAHGVVVLEQLNPEYGAERRRLRVLKMRAASYRGGYHDFAIRTGGLRVFPRLVAAE
HHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
HRAGATQPERCLTGLEPLDRMLGGGLDRGTSTLVVGPAGAGKSTLATQIVEAAARRGETV
HHCCCCCHHHHHHCHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEE
AVFAFDEPRATLLARARATGLDLAPYEEAGTVQVTQVDPAEISAGELIHQVRTAVERGAR
EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCE
MVLIDSLNGLLQAMPSEGSLVLQVHEMLSFLAEKHVVTLLTMAQHGIIGEMLAPADVTYL
EEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH
ADTVVLLRYFEAGGGVRKAISVVKKRLGAHESTIREYLPTATGLRLGAPLTAFRGVLTGV
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
PEFEPGAAGAQLLPVQSP
CCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
STANGPLTPRAATGIPGLDDVLGGGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGES
CCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
CLYIAMSESREEVASVAASHGWDLGGVAVFDASELDGSEEENTILEPAEVELGERMRAIL
EEEEEECCCHHHHHHHHHHCCCCCCCEEEEECHHCCCCCCCCCCCCCHHHHHHHHHHHHH
TEVERVQPNRVVLDSCTELRLLAQTPIRYRRQLLALKRQLVEKDRTVLLLDNPSPESPDV
HHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
LVQSLAHGVVVLEQLNPEYGAERRRLRVLKMRAASYRGGYHDFAIRTGGLRVFPRLVAAE
HHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
HRAGATQPERCLTGLEPLDRMLGGGLDRGTSTLVVGPAGAGKSTLATQIVEAAARRGETV
HHCCCCCHHHHHHCHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEE
AVFAFDEPRATLLARARATGLDLAPYEEAGTVQVTQVDPAEISAGELIHQVRTAVERGAR
EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCE
MVLIDSLNGLLQAMPSEGSLVLQVHEMLSFLAEKHVVTLLTMAQHGIIGEMLAPADVTYL
EEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH
ADTVVLLRYFEAGGGVRKAISVVKKRLGAHESTIREYLPTATGLRLGAPLTAFRGVLTGV
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
PEFEPGAAGAQLLPVQSP
CCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12477935 [H]