| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220905440
Identifier: 220905440
GI number: 220905440
Start: 2627782
End: 2629869
Strand: Direct
Name: 220905440
Synonym: Ddes_2178
Alternate gene names: NA
Gene position: 2627782-2629869 (Clockwise)
Preceding gene: 220905430
Following gene: 220905441
Centisome position: 91.45
GC content: 62.36
Gene sequence:
>2088_bases ATGAAACGCTTTCTGCTCTGGACAATGGGTATCGTGCTGGCAGCCGTTGCTGTTCTGGCCGTCATGCTCGGCCGGATGGA CACGGACTTCGTGATCCGGCAGATCGCCGACGCCACGGCCGGGGCCACAGGCAAGCCCCTTGTGTTTGAAAGTTCGCCGA AAATATCCTTTTTTCCTCCCGGCGTCAGTTTTGGGCAGGCCCGGTGGGGACAGGCGGAGCAGGACGACAGTCTTGCCGTT TCCGTCAAGGGCGGCATGGCCGAACTTGAATTCATGCCGCTGCTGTCCGGCAATGTGGTCCTGCGCGAGGTCCGGCTGGA CAACCCCACGGTCACTGTGCGGCAAAACGCGCAGGTCATAAAAAACGGCAAACAGCCGACAGATGCCGCAGCGGCTGAAA AGAATGCTGCGGCGGACAACGGGAGCGCCAGAGAGAACACCAGCCCCGCCAAAAGCGTAAAACCGGACGCCGCGCCCCGT GACGCCGCGCCGCCCGTCGAGCTTAAGCGTCTGGTCATACGCCAGGGGTCTCTGAATATTACCGATACGCAGGGGCAGGA CATCAAGATCAGTGACCTGAATATTTCTGCAGAAAATCTGCGCCCGGAGCAGGAAACAACTGCCAGGTGCGACTTTACCA TCGCCCTGGGCGACGCTCCGGGAACACCCGGGCATATCTCGGGCAACCTGGCCCTGTCGGCCAAGCTCCGCTATGCGCCA CCCATGCTCACCCTGCGCCAGGCATCCCTGACGTTCAACCCGCTTTCCGGCCCACTGCCCAAAGAAGCTGGCCCCCTGCA ACTCAATATTGAAGGCAGCCTGGACCTGAACATCATGCGGATGCGCGTGGACAAGGGCTGGCTTGCCACGCCCCAGGCGC GCCTGGGCATTCAGGGCGAGGCCGCATTCAGTCCTCCGGCCTTCACCGGCAATGCCGAAATAGACGGCTCACCCCGCAAG CTCGCGGCCATGGCCGGGCTGAACCTCAAGCCCGTGGCGCAGGGCGTCACAGACGGGCTGAACCTCAAGGCCCGGCTGGC CTACGGCAATAACAGCCTCAATCTTTCAGATATTCACGCCCGCGTGGATGACATCACCCTGCGCGGCCAGTTCCGCCTGG GCCTTGAGCCGGGCGCGCCTCTGTCCATAACTGCCGATGTCCAGGTCGGCGCCATCAATCTGGATAATTACCTGCCCCTG CCCGCAGCCCCAGCAAAAAACAGCAAAACAGACGCAGCGCCCGCAAACGCAAGCACCGCCGCCAGCAAAAAAGAAAAAGG CGGGACAGGCAAAGCGCCCATGCCGGACATCAATATCCGTCTGGCCCTTGCGGGCCTGAACAAGGACAAACTTCAGCTCC GTGATATACAACTGGCGGCGCAAGGCCTGCGGGGCAACTACACCATCACCGCCCTTAACGCCATTCTCGGCAGCGGCGGC AAGGTGCGTGCCACAGGAGCCGCCCGGCTGGCCGACACCGCCAGCCCCGCCTATGCGATCAAAGGCACGGCCTCGGATAT AAATATGGGCAACCTGCTGGAAAGCCTCGGCAAAGGGCGCCCCCTGAGCGGTACGGCCCTGCTTGAGGCAGACCTGACCA TGGCCGGAAAAGACGTCACCGCCCTGCAAAACAGCCTTTCCGGCAAAGGGCTGCTCGAAATCCGCCGGGTGCGCCTGGAA TCCTTACCAACCCTGCCCCAGAACATTCCCGGCCTTCAGGGGCGCGTACCCGACACTTTTGAACTGGTACGCGCGCCCTT CACCGCGCGAAGCGGCGAAATAAACGCCAATCCGGTCAGTGCCAGCGCACAGGGCCTCAATGCACGGGGACGCGCAGCCA TAAACCTGCCGCGCCAGCACCTGGACGCCACGGTCAACGTGGAGACACTGGGCATGACCATACCGTTGATCATTCGCGGG CCGTTCGACAATATCTCGTATTCTGCGGATCCGCGCTTCGCTCTGGACGCCGCCAGCAAGCTGCCCGCCATCTTGCAGGG CAAAACCTCAAAAAGCGGCACAGACCCGCAGCGACAGGACGACATGCGCGGCGCTGGGGACCTTATACGGGGCCTTTTCG GACGCTGA
Upstream 100 bases:
>100_bases GAGCGGCCACGCCCCCGGCCCCTGTGAGGCGGCGCGGAACGGCATGAGCGGCAACAGCGGGCATGCACGGCGGACCGGAA TACTCTGGAGATAATAAATT
Downstream 100 bases:
>100_bases TTTCCGGCGCGGACAGCCGAAAACCCTGCATCCCGGCAGGCCGGAGAGCCGTGCAGGATGAAAAGCAGCCAGGGGCGCAC TGCCGCAGCCGGGCAAAACG
Product: AsmA family protein
Products: NA
Alternate protein names: AsmA Protein
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MKRFLLWTMGIVLAAVAVLAVMLGRMDTDFVIRQIADATAGATGKPLVFESSPKISFFPPGVSFGQARWGQAEQDDSLAV SVKGGMAELEFMPLLSGNVVLREVRLDNPTVTVRQNAQVIKNGKQPTDAAAAEKNAAADNGSARENTSPAKSVKPDAAPR DAAPPVELKRLVIRQGSLNITDTQGQDIKISDLNISAENLRPEQETTARCDFTIALGDAPGTPGHISGNLALSAKLRYAP PMLTLRQASLTFNPLSGPLPKEAGPLQLNIEGSLDLNIMRMRVDKGWLATPQARLGIQGEAAFSPPAFTGNAEIDGSPRK LAAMAGLNLKPVAQGVTDGLNLKARLAYGNNSLNLSDIHARVDDITLRGQFRLGLEPGAPLSITADVQVGAINLDNYLPL PAAPAKNSKTDAAPANASTAASKKEKGGTGKAPMPDINIRLALAGLNKDKLQLRDIQLAAQGLRGNYTITALNAILGSGG KVRATGAARLADTASPAYAIKGTASDINMGNLLESLGKGRPLSGTALLEADLTMAGKDVTALQNSLSGKGLLEIRRVRLE SLPTLPQNIPGLQGRVPDTFELVRAPFTARSGEINANPVSASAQGLNARGRAAINLPRQHLDATVNVETLGMTIPLIIRG PFDNISYSADPRFALDAASKLPAILQGKTSKSGTDPQRQDDMRGAGDLIRGLFGR
Sequences:
>Translated_695_residues MKRFLLWTMGIVLAAVAVLAVMLGRMDTDFVIRQIADATAGATGKPLVFESSPKISFFPPGVSFGQARWGQAEQDDSLAV SVKGGMAELEFMPLLSGNVVLREVRLDNPTVTVRQNAQVIKNGKQPTDAAAAEKNAAADNGSARENTSPAKSVKPDAAPR DAAPPVELKRLVIRQGSLNITDTQGQDIKISDLNISAENLRPEQETTARCDFTIALGDAPGTPGHISGNLALSAKLRYAP PMLTLRQASLTFNPLSGPLPKEAGPLQLNIEGSLDLNIMRMRVDKGWLATPQARLGIQGEAAFSPPAFTGNAEIDGSPRK LAAMAGLNLKPVAQGVTDGLNLKARLAYGNNSLNLSDIHARVDDITLRGQFRLGLEPGAPLSITADVQVGAINLDNYLPL PAAPAKNSKTDAAPANASTAASKKEKGGTGKAPMPDINIRLALAGLNKDKLQLRDIQLAAQGLRGNYTITALNAILGSGG KVRATGAARLADTASPAYAIKGTASDINMGNLLESLGKGRPLSGTALLEADLTMAGKDVTALQNSLSGKGLLEIRRVRLE SLPTLPQNIPGLQGRVPDTFELVRAPFTARSGEINANPVSASAQGLNARGRAAINLPRQHLDATVNVETLGMTIPLIIRG PFDNISYSADPRFALDAASKLPAILQGKTSKSGTDPQRQDDMRGAGDLIRGLFGR >Mature_695_residues MKRFLLWTMGIVLAAVAVLAVMLGRMDTDFVIRQIADATAGATGKPLVFESSPKISFFPPGVSFGQARWGQAEQDDSLAV SVKGGMAELEFMPLLSGNVVLREVRLDNPTVTVRQNAQVIKNGKQPTDAAAAEKNAAADNGSARENTSPAKSVKPDAAPR DAAPPVELKRLVIRQGSLNITDTQGQDIKISDLNISAENLRPEQETTARCDFTIALGDAPGTPGHISGNLALSAKLRYAP PMLTLRQASLTFNPLSGPLPKEAGPLQLNIEGSLDLNIMRMRVDKGWLATPQARLGIQGEAAFSPPAFTGNAEIDGSPRK LAAMAGLNLKPVAQGVTDGLNLKARLAYGNNSLNLSDIHARVDDITLRGQFRLGLEPGAPLSITADVQVGAINLDNYLPL PAAPAKNSKTDAAPANASTAASKKEKGGTGKAPMPDINIRLALAGLNKDKLQLRDIQLAAQGLRGNYTITALNAILGSGG KVRATGAARLADTASPAYAIKGTASDINMGNLLESLGKGRPLSGTALLEADLTMAGKDVTALQNSLSGKGLLEIRRVRLE SLPTLPQNIPGLQGRVPDTFELVRAPFTARSGEINANPVSASAQGLNARGRAAINLPRQHLDATVNVETLGMTIPLIIRG PFDNISYSADPRFALDAASKLPAILQGKTSKSGTDPQRQDDMRGAGDLIRGLFGR
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73016; Mature: 73016
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFLLWTMGIVLAAVAVLAVMLGRMDTDFVIRQIADATAGATGKPLVFESSPKISFFPP CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECC GVSFGQARWGQAEQDDSLAVSVKGGMAELEFMPLLSGNVVLREVRLDNPTVTVRQNAQVI CCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEEEECCCCEEEEECCHHHH KNGKQPTDAAAAEKNAAADNGSARENTSPAKSVKPDAAPRDAAPPVELKRLVIRQGSLNI HCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE TDTQGQDIKISDLNISAENLRPEQETTARCDFTIALGDAPGTPGHISGNLALSAKLRYAP ECCCCCEEEEEEEEEEHHHCCCCCCCCCEEEEEEEECCCCCCCCEECCCEEEEEEEECCC PMLTLRQASLTFNPLSGPLPKEAGPLQLNIEGSLDLNIMRMRVDKGWLATPQARLGIQGE CCEEEEECEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHCCCCCC AAFSPPAFTGNAEIDGSPRKLAAMAGLNLKPVAQGVTDGLNLKARLAYGNNSLNLSDIHA CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCEEEEEEECCCCCCHHHHHE RVDDITLRGQFRLGLEPGAPLSITADVQVGAINLDNYLPLPAAPAKNSKTDAAPANASTA EEEEEEEEEEEEECCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH ASKKEKGGTGKAPMPDINIRLALAGLNKDKLQLRDIQLAAQGLRGNYTITALNAILGSGG HHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEHHHHHHHHHCCCCCEEEEEEHHHHCCCC KVRATGAARLADTASPAYAIKGTASDINMGNLLESLGKGRPLSGTALLEADLTMAGKDVT EEEECCCHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCEECCCHHH ALQNSLSGKGLLEIRRVRLESLPTLPQNIPGLQGRVPDTFELVRAPFTARSGEINANPVS HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC ASAQGLNARGRAAINLPRQHLDATVNVETLGMTIPLIIRGPFDNISYSADPRFALDAASK CCCCCCCCCCCEEEECCHHHCCCEEEEEEECEEEEEEEECCCCCCCCCCCCCEEEHHHHH LPAILQGKTSKSGTDPQRQDDMRGAGDLIRGLFGR CCHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHCC >Mature Secondary Structure MKRFLLWTMGIVLAAVAVLAVMLGRMDTDFVIRQIADATAGATGKPLVFESSPKISFFPP CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECC GVSFGQARWGQAEQDDSLAVSVKGGMAELEFMPLLSGNVVLREVRLDNPTVTVRQNAQVI CCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEEEECCCCEEEEECCHHHH KNGKQPTDAAAAEKNAAADNGSARENTSPAKSVKPDAAPRDAAPPVELKRLVIRQGSLNI HCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE TDTQGQDIKISDLNISAENLRPEQETTARCDFTIALGDAPGTPGHISGNLALSAKLRYAP ECCCCCEEEEEEEEEEHHHCCCCCCCCCEEEEEEEECCCCCCCCEECCCEEEEEEEECCC PMLTLRQASLTFNPLSGPLPKEAGPLQLNIEGSLDLNIMRMRVDKGWLATPQARLGIQGE CCEEEEECEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCHHHCCCCCC AAFSPPAFTGNAEIDGSPRKLAAMAGLNLKPVAQGVTDGLNLKARLAYGNNSLNLSDIHA CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCEEEEEEECCCCCCHHHHHE RVDDITLRGQFRLGLEPGAPLSITADVQVGAINLDNYLPLPAAPAKNSKTDAAPANASTA EEEEEEEEEEEEECCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH ASKKEKGGTGKAPMPDINIRLALAGLNKDKLQLRDIQLAAQGLRGNYTITALNAILGSGG HHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEHHHHHHHHHCCCCCEEEEEEHHHHCCCC KVRATGAARLADTASPAYAIKGTASDINMGNLLESLGKGRPLSGTALLEADLTMAGKDVT EEEECCCHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCEECCCHHH ALQNSLSGKGLLEIRRVRLESLPTLPQNIPGLQGRVPDTFELVRAPFTARSGEINANPVS HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC ASAQGLNARGRAAINLPRQHLDATVNVETLGMTIPLIIRGPFDNISYSADPRFALDAASK CCCCCCCCCCCEEEECCHHHCCCEEEEEEECEEEEEEEECCCCCCCCCCCCCEEEHHHHH LPAILQGKTSKSGTDPQRQDDMRGAGDLIRGLFGR CCHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA