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The map label for this gene is rbpE [H]

Identifier: 220905189

GI number: 220905189

Start: 2320704

End: 2320970

Strand: Direct

Name: rbpE [H]

Synonym: Ddes_1927

Alternate gene names: 220905189

Gene position: 2320704-2320970 (Clockwise)

Preceding gene: 220905188

Following gene: 220905193

Centisome position: 80.76

GC content: 61.42

Gene sequence:

>267_bases
ATGGCTACTTCCATCTATGTCGGCAATCTGCCCTGGTCCGCCACCGAAGACGCTGTGCGCGATCTCTTTTCCGCTCACGG
TGATCCTATTTCGGTCAAACTGATCTCTGACCGCGAAACCGGCCGCGCCCGCGGCTTCGGCTTTGTGGAAATGGAAGACG
ACGAAGCCCAGAACGCCATTTCCGCCCTCAACGGCATGGACTTTGGCGGCCGCGCTCTTCGCGTCAACAAGGCCGAAGAA
CGCCGTCCCGCTCCCCGCCGCTGGTAG

Upstream 100 bases:

>100_bases
TCCACTTATTGGGTCCAGTATTTTTTTTGCCAGAGACTTTACACGGGTGTAAGGCTTCAAGCGGAAAGTCTGCACCCAGA
ACACAATACGGAGTCTCTAA

Downstream 100 bases:

>100_bases
TCCGGCAGCAAGGCAGGACGTCTGCCTGACAGTAAAAGGCCGCAAGCAATTGCGGCCTTTTTTATTACATACCCTCTTCA
GCGTTAATCCCCGCTGGGCG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MATSIYVGNLPWSATEDAVRDLFSAHGDPISVKLISDRETGRARGFGFVEMEDDEAQNAISALNGMDFGGRALRVNKAEE
RRPAPRRW

Sequences:

>Translated_88_residues
MATSIYVGNLPWSATEDAVRDLFSAHGDPISVKLISDRETGRARGFGFVEMEDDEAQNAISALNGMDFGGRALRVNKAEE
RRPAPRRW
>Mature_87_residues
ATSIYVGNLPWSATEDAVRDLFSAHGDPISVKLISDRETGRARGFGFVEMEDDEAQNAISALNGMDFGGRALRVNKAEER
RPAPRRW

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=50, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=50, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI35493811, Length=81, Percent_Identity=40.7407407407407, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI4757926, Length=81, Percent_Identity=40.7407407407407, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI116734696, Length=78, Percent_Identity=39.7435897435897, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI116734694, Length=78, Percent_Identity=39.7435897435897, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI116734698, Length=78, Percent_Identity=39.7435897435897, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=41.3333333333333, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI185135971, Length=80, Percent_Identity=43.75, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=53.1645569620253, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=50, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=48.6842105263158, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=44.7368421052632, Blast_Score=76, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=48.6842105263158, Blast_Score=79, Evalue=8e-16,
Organism=Drosophila melanogaster, GI19920866, Length=78, Percent_Identity=39.7435897435897, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582412, Length=78, Percent_Identity=39.7435897435897, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582417, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550943, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582419, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582423, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582421, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9752; Mature: 9621

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSIYVGNLPWSATEDAVRDLFSAHGDPISVKLISDRETGRARGFGFVEMEDDEAQNAI
CCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH
SALNGMDFGGRALRVNKAEERRPAPRRW
HHHCCCCCCCEEEEECCHHHCCCCCCCC
>Mature Secondary Structure 
ATSIYVGNLPWSATEDAVRDLFSAHGDPISVKLISDRETGRARGFGFVEMEDDEAQNAI
CCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH
SALNGMDFGGRALRVNKAEERRPAPRRW
HHHCCCCCCCEEEEECCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]