Click here to switch to the map view.

The map label for this gene is plpC [H]

Identifier: 220904810

GI number: 220904810

Start: 1844039

End: 1844815

Strand: Direct

Name: plpC [H]

Synonym: Ddes_1542

Alternate gene names: 220904810

Gene position: 1844039-1844815 (Clockwise)

Preceding gene: 220904809

Following gene: 220904811

Centisome position: 64.18

GC content: 56.5

Gene sequence:

>777_bases
ATGAAACGCCTGCTTCTGTCCCTGGTCATGATTCTGACTATGGCCGCTCCCTCTTTTGCCGCCGAGGACATCGTCGTCGG
CGTCACGCCCTTCCCGCACAAGGACATCATGCTTGTGGCCAAGCCCCTGCTCGCCAAGGACGGTTACAATCTGGTCATCA
AGGAATTTACCGACTACGTGCAGCCCAACATGGCCCTGTCCAACGGGCAGCTCTATGCCAACTTTTTCCAGCATGCACCC
TACCTTGACAATATGAACAAGGAAAAAAAGCTGGGCCTCGCTTCCGTCGGCAAAGTTCATATCGAGCCGCTGGGCGTGTA
TTCCAAAAAGATTAAAAAACTGTCGGATATCAAAAAGGGCAGTGCCATTGCCGTGCCCAATGACCCCACCAACGAAGCCC
GCGCCCTGCGCCTGCTCGAAGCTAACGGCATCATCAAGGTCAAGCCCGGCGCGCTCATCACTGTGGCTGATGTCACCGAA
AATCCGCTGAATCTCAAGATTCATGAACTGGACGCCGCCCAGTTGCCCCGCACGCTGGACGATGTGGCCGCCGCTGTCAT
CAACACCAACTTTGCCGGCGAGGCCGGCCTTGTGCCCGCCCGCGATGCCCTTGTGCTGGAAGACAGCGAATCCCCGTATG
CCAATATTGTTGTGGTTCGCGAAGCCGACAAGGACAGCCCCAAGACCAAGGCCCTCATGAAGGCCGTTCAGTCGCCCGAG
GTCAAGGCCTACATCGAAAAAGAACTGGTAGGCAAAGGCATCATGCCTTCGTTCTAG

Upstream 100 bases:

>100_bases
TGCAACTTTTTGTACAAAATTCTGCGATAAAGCCCGCTGCGCGCGCAACGGGCTTTTGTCCCTCTTCAACGGCACAGTCT
TACCCGCACAAGGAGCCATC

Downstream 100 bases:

>100_bases
AGCGGTTACGCTTGAAATGGCTGCGTACCGATCGAAACATCGCTGCTGCCCTCGTCCGTAACTTCTTTTGTCGTAACGGT
CGAAGCAAGTTCGCCTTGCA

Product: NLPA lipoprotein

Products: NA

Alternate protein names: PLP3 [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKRLLLSLVMILTMAAPSFAAEDIVVGVTPFPHKDIMLVAKPLLAKDGYNLVIKEFTDYVQPNMALSNGQLYANFFQHAP
YLDNMNKEKKLGLASVGKVHIEPLGVYSKKIKKLSDIKKGSAIAVPNDPTNEARALRLLEANGIIKVKPGALITVADVTE
NPLNLKIHELDAAQLPRTLDDVAAAVINTNFAGEAGLVPARDALVLEDSESPYANIVVVREADKDSPKTKALMKAVQSPE
VKAYIEKELVGKGIMPSF

Sequences:

>Translated_258_residues
MKRLLLSLVMILTMAAPSFAAEDIVVGVTPFPHKDIMLVAKPLLAKDGYNLVIKEFTDYVQPNMALSNGQLYANFFQHAP
YLDNMNKEKKLGLASVGKVHIEPLGVYSKKIKKLSDIKKGSAIAVPNDPTNEARALRLLEANGIIKVKPGALITVADVTE
NPLNLKIHELDAAQLPRTLDDVAAAVINTNFAGEAGLVPARDALVLEDSESPYANIVVVREADKDSPKTKALMKAVQSPE
VKAYIEKELVGKGIMPSF
>Mature_258_residues
MKRLLLSLVMILTMAAPSFAAEDIVVGVTPFPHKDIMLVAKPLLAKDGYNLVIKEFTDYVQPNMALSNGQLYANFFQHAP
YLDNMNKEKKLGLASVGKVHIEPLGVYSKKIKKLSDIKKGSAIAVPNDPTNEARALRLLEANGIIKVKPGALITVADVTE
NPLNLKIHELDAAQLPRTLDDVAAAVINTNFAGEAGLVPARDALVLEDSESPYANIVVVREADKDSPKTKALMKAVQSPE
VKAYIEKELVGKGIMPSF

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786396, Length=224, Percent_Identity=50.4464285714286, Blast_Score=200, Evalue=6e-53,
Organism=Escherichia coli, GI1790093, Length=247, Percent_Identity=41.7004048582996, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872
- InterPro:   IPR004478 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 27967; Mature: 27967

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLLSLVMILTMAAPSFAAEDIVVGVTPFPHKDIMLVAKPLLAKDGYNLVIKEFTDYV
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHEEECHHHHCCCCEEHHHHHHHHH
QPNMALSNGQLYANFFQHAPYLDNMNKEKKLGLASVGKVHIEPLGVYSKKIKKLSDIKKG
CCCCEECCCCCHHHHHHCCCCCCCCCHHHHCCHHHCCEEEEEECCHHHHHHHHHHHCCCC
SAIAVPNDPTNEARALRLLEANGIIKVKPGALITVADVTENPLNLKIHELDAAQLPRTLD
CEEECCCCCCCHHHEEEEEECCCEEEECCCCEEEEEECCCCCCEEEEEECCHHHCCHHHH
DVAAAVINTNFAGEAGLVPARDALVLEDSESPYANIVVVREADKDSPKTKALMKAVQSPE
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC
VKAYIEKELVGKGIMPSF
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRLLLSLVMILTMAAPSFAAEDIVVGVTPFPHKDIMLVAKPLLAKDGYNLVIKEFTDYV
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHEEECHHHHCCCCEEHHHHHHHHH
QPNMALSNGQLYANFFQHAPYLDNMNKEKKLGLASVGKVHIEPLGVYSKKIKKLSDIKKG
CCCCEECCCCCHHHHHHCCCCCCCCCHHHHCCHHHCCEEEEEECCHHHHHHHHHHHCCCC
SAIAVPNDPTNEARALRLLEANGIIKVKPGALITVADVTENPLNLKIHELDAAQLPRTLD
CEEECCCCCCCHHHEEEEEECCCEEEECCCCEEEEEECCCCCCEEEEEECCHHHCCHHHH
DVAAAVINTNFAGEAGLVPARDALVLEDSESPYANIVVVREADKDSPKTKALMKAVQSPE
HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC
VKAYIEKELVGKGIMPSF
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8335249; 8406866 [H]