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The map label for this gene is vipC [H]

Identifier: 220904286

GI number: 220904286

Start: 1182490

End: 1184928

Strand: Direct

Name: vipC [H]

Synonym: Ddes_1013

Alternate gene names: 220904286

Gene position: 1182490-1184928 (Clockwise)

Preceding gene: 220904285

Following gene: 220904287

Centisome position: 41.15

GC content: 53.83

Gene sequence:

>2439_bases
ATGGCGATTTCAGATTTTATCAAGGGCGCGCCCATGCGCCCGCCATCCCATTTTATCGGACCCGTGGCATGGTGGAGCGA
TTCTTTGACATGCCGTGGTGTTGAAAGGCAGGTTGTACATAGCGCCAGATATTTTCATCAAAAAAAGAAAAAGATTACAT
TGCTCTGCCGGACCATTGCGCCTGGTGGCGGAAATGATTTTTTTCTTGAAGATGCACGAGCCTGCAGCCGGGTGTTGGGG
TTTTCACTGGATGTAGTGGACCGCGACCTCTTTGATAAGGCGCGCGGCATTATTGGATCGTTTGTATCTGGCGCTTCGCC
TGTTTTTATAGACAGCATTGCTGCATATGCGGCATGGCTGTTGCGTGTGCGCCCCAGGATGCTGCACATATGGAATGCTG
ATCACCTGGAGCCGTTGCTGGCAGCCCTGATTGCCGGTGTACCCAATATTGTTATTGCCGGGCAGAGCCTTTCCCCTGCC
CAGCGTGCTCCTCGCGGTTTTGAAAGTGTCAATGACCGTACCGCATTTGCGATTCTGGCAAATGTCATGCGGCTCCCTCA
TGTGGTCATGACAAATAACAGCCGTGCGGGATGTACCGCCTACGAAGAATGGCTTGGTCTTCCCCCGGGAACTGTTCGCC
TTACCCCCAATATTTTTGATCTGGCAGCATGGCCGCGCCCGGCAGATGCCCAGGTGGCCGAACTGAGAGCGGCGCTGGGT
ATTCCTGCAAATGCGCGTGTGCTTGGGGGGCTTTTTCGCTTTGTTTCCATCAAGGATCCGGAACTGTGGGTCAGTGCTGC
CATCCGGGCTTGCGCAGCCGTGCCAGATCTTTATGCAGTTGTGGGCGGGGATGGCCTGGAACTGGAATCCATGAAATCTC
GTATTGCAGAAACGCCTTTTGCAGGACGCATACTGTTTCCCGGGCCTGTCAGGGATGTGCCTGCCTTCTTGTCCATGTGT
TCTGTTTTTTTGCATACTGCTCATGTGGAGGGGCTGCCAAATGCCCTTCTGGAGGCGCAAGCCTATGAAGTGCCTGTGGT
CACTACGCACTGTGGTGGGGCCGCGGATGTGGTGGAGCATGGCAAAAGCGGTTTTGTGGTGGAAGAGAGGGATGCTGTCG
CTCTTGCCAAGTATGTAGAATATCTGCTTGATCATCAGGCTTTTGCCAATAGCGCCGGTCAGGCCGGGCGGCAGCGTGTA
ACGGAAAATTTTTCTCCAGAGCGCACAATGGGCATGCTGTGGGATGTCTATAGCGATATTTTCCCCGACGATTTTCCGAT
CAGAACAGCACCGCAGGAAGATACGGCTTGTGCCGGACTGGAAGTGGTGGGTAAAGTTTGTCCGCTGGTCAGTATTGTGT
TGCCGACCTACAATCATCTTTCGTTTCTTCCTCTGGCCATTGAATCTGTTTTGGGGCAGGATTATCCCAATTTTGAACTT
GTCATTGTTGATGACGGCTCTACAGACGGCACGGCAAGTTATCTTGAAACGCTCGATTCACCTCACATACGTGTTGAAAG
CGGGCCAAACACCAGGCTTCCTGCCGCGCTCAATCGTGGGTTCGCGTTGGCGCGGGGCGAGTACCTTACGTGGGTTTCGG
CAGACAACATCTGCCTGCCGCATTTTTGCAGTTCTCTTGCCGGTGCGCTGAGCGCATTTCCCCAGGCGGGGTTTGCTTCA
GGGGGCTTTGCGCGTATTTCCCAGCAGGGGTGGATTCTTGACCATCTTGCAGGGGCGGTTTCGCTGGATACACTTCTTTG
CAGTAACAGCGGCATAGCTGCTTTTATGTACCGCAGGGATGTAGCCATGCAGGTGGGAGAGTACGACCCCAGGCTTGAAG
GCGCTGAGGATTGGGACATGTGGCTGCGTATGCTGGATGTAACGTTGCCCGTGTCTGTGCCGCATGTTCTCTATCACTAC
CGCTTGCACGACAATTCCATGACAGCGAGGCTGTCGGAAAAAGTTAGGGAAAGTTCGACCAGAACAGCATTCAAGGCGTT
GCGCCGGTTGGAGCAGGGTGGTGGCATACGCAAGCTTTTTCCCCAGATTGAAGACTGTAAGAATCAGGAGCTTGCGCTCT
TTCATGCACATCTGGTCATGGGAAGCCGTATGATACAGCCAGGATCATTTCTGAAGCAGGCAGCGGCCAGATACCTGGGC
GTTGCGTACGGCATGCGCCCTGACGATCTGCTTGTTATGGGTAACTATGCTGTTGCGCTGCTCTGGCAAGGACGGCACGA
TATGGCAAACGAGCTGTTTTGCCGTGGAAAAGCGCAGGCGACCGAGCTTTTTGAAGCTCTTCAATCTGCATGTGCAAAGC
AGCAACGCAATGTCGGCAGGCATGAGTTTAATTGTCCGACGCTGCAATGTCCTGGTCCTGAAGAAAGTGAATTGCTGGGG
CGAGTGGCCGCATCCCGGCTCAGATTTACTGACTGTTAA

Upstream 100 bases:

>100_bases
TGCTTGATTCTGGCAGGTGTCAAAAAAATATCGTAACCTGCCGCTATGCCTCTGTCTTTGAAAATATCTGACATGACGCG
GAACCACCGGGGAAGATTCA

Downstream 100 bases:

>100_bases
CCGTACCCCATAGGCAGGAACTTGTATGGCCTCACTCCGGAATGCTACATCAGAGGTAGAGTTTTACCTTGTTGATGCCT
TTGAGATATTTCACTATCTG

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 812; Mature: 811

Protein sequence:

>812_residues
MAISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIAPGGGNDFFLEDARACSRVLG
FSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWLLRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPA
QRAPRGFESVNDRTAFAILANVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG
IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPFAGRILFPGPVRDVPAFLSMC
SVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEHGKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRV
TENFSPERTMGMLWDVYSDIFPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL
VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLPHFCSSLAGALSAFPQAGFAS
GGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRDVAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHY
RLHDNSMTARLSEKVRESSTRTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG
VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGRHEFNCPTLQCPGPEESELLG
RVAASRLRFTDC

Sequences:

>Translated_812_residues
MAISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIAPGGGNDFFLEDARACSRVLG
FSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWLLRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPA
QRAPRGFESVNDRTAFAILANVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG
IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPFAGRILFPGPVRDVPAFLSMC
SVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEHGKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRV
TENFSPERTMGMLWDVYSDIFPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL
VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLPHFCSSLAGALSAFPQAGFAS
GGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRDVAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHY
RLHDNSMTARLSEKVRESSTRTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG
VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGRHEFNCPTLQCPGPEESELLG
RVAASRLRFTDC
>Mature_811_residues
AISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIAPGGGNDFFLEDARACSRVLGF
SLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWLLRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPAQ
RAPRGFESVNDRTAFAILANVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALGI
PANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPFAGRILFPGPVRDVPAFLSMCS
VFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEHGKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRVT
ENFSPERTMGMLWDVYSDIFPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFELV
IVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLPHFCSSLAGALSAFPQAGFASG
GFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRDVAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHYR
LHDNSMTARLSEKVRESSTRTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLGV
AYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGRHEFNCPTLQCPGPEESELLGR
VAASRLRFTDC

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788372, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 88805; Mature: 88673

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIA
CCCHHHHCCCCCCCCHHHCCCHHHCCCCCEECCHHHHHHHHHHHHHHHHHHEEEEEEECC
PGGGNDFFLEDARACSRVLGFSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWL
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPAQRAPRGFESVNDRTAFAILA
HHHCCHHEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCCHHHCCCHHHHHHHH
NVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG
HHHHCCEEEEECCCCCCCHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCHHHHHHHHHHC
IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPF
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHCCCC
AGRILFPGPVRDVPAFLSMCSVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEH
CCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHC
GKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRVTENFSPERTMGMLWDVYSDI
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEE
VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLP
EEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHCCCEEEECCCEEEEECCCCEEHH
HFCSSLAGALSAFPQAGFASGGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRD
HHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
VAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHYRLHDNSMTARLSEKVRESST
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
RTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGR
HHCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
HEFNCPTLQCPGPEESELLGRVAASRLRFTDC
CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AISDFIKGAPMRPPSHFIGPVAWWSDSLTCRGVERQVVHSARYFHQKKKKITLLCRTIA
CCHHHHCCCCCCCCHHHCCCHHHCCCCCEECCHHHHHHHHHHHHHHHHHHEEEEEEECC
PGGGNDFFLEDARACSRVLGFSLDVVDRDLFDKARGIIGSFVSGASPVFIDSIAAYAAWL
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRVRPRMLHIWNADHLEPLLAALIAGVPNIVIAGQSLSPAQRAPRGFESVNDRTAFAILA
HHHCCHHEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCCHHHCCCHHHHHHHH
NVMRLPHVVMTNNSRAGCTAYEEWLGLPPGTVRLTPNIFDLAAWPRPADAQVAELRAALG
HHHHCCEEEEECCCCCCCHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCHHHHHHHHHHC
IPANARVLGGLFRFVSIKDPELWVSAAIRACAAVPDLYAVVGGDGLELESMKSRIAETPF
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHCCCC
AGRILFPGPVRDVPAFLSMCSVFLHTAHVEGLPNALLEAQAYEVPVVTTHCGGAADVVEH
CCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHC
GKSGFVVEERDAVALAKYVEYLLDHQAFANSAGQAGRQRVTENFSPERTMGMLWDVYSDI
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FPDDFPIRTAPQEDTACAGLEVVGKVCPLVSIVLPTYNHLSFLPLAIESVLGQDYPNFEL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEE
VIVDDGSTDGTASYLETLDSPHIRVESGPNTRLPAALNRGFALARGEYLTWVSADNICLP
EEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHCCCEEEECCCEEEEECCCCEEHH
HFCSSLAGALSAFPQAGFASGGFARISQQGWILDHLAGAVSLDTLLCSNSGIAAFMYRRD
HHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
VAMQVGEYDPRLEGAEDWDMWLRMLDVTLPVSVPHVLYHYRLHDNSMTARLSEKVRESST
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
RTAFKALRRLEQGGGIRKLFPQIEDCKNQELALFHAHLVMGSRMIQPGSFLKQAAARYLG
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VAYGMRPDDLLVMGNYAVALLWQGRHDMANELFCRGKAQATELFEALQSACAKQQRNVGR
HHCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
HEFNCPTLQCPGPEESELLGRVAASRLRFTDC
CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8248629; 8331073; 11677608; 12644504 [H]