| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is ygcB [H]
Identifier: 220904195
GI number: 220904195
Start: 1075355
End: 1077937
Strand: Direct
Name: ygcB [H]
Synonym: Ddes_0922
Alternate gene names: 220904195
Gene position: 1075355-1077937 (Clockwise)
Preceding gene: 220904191
Following gene: 220904196
Centisome position: 37.42
GC content: 53.19
Gene sequence:
>2583_bases ATGGAAAAGTATACGTTTTGGGCTAAAACATATGCTTCAAATCTGCCGGGGATATCAGTGCTCCTGCATGGCAGGTTTGC CAGCGCTGTGGGGCGCTGCCTTGTACGGGCCATGTTTCCTCCGCAGTGGCAAGATTTGCATGCTGTTGTTGCCTTTCTGC TATCCATACATGATGTCGGCAAAATCAGCCCGCAATTTCAGGGCAAATGCCTTTTGTGGCTTGAGCAGAACGGTCTTGCC AGAGAGGCCGCAAACAATGCGTGGCCCAGTTTTACTACGACACATGCCTGCCTTTCACAGGAAATTCTTGATTATTTTTG GCAACAAAAGGGGCTTCTGTCAGAGTCGTACTCCCTGTGGAGCGCCATCGTGGGCGCACATCACGGCAAATGGGCCAAGG CAAAACCGCATCATTACGGACAGGTTTCACCACCTTGCCTGGCCCCATCCCCATCAGTCGACTGGCTGCGGGAAGAGCTG AATTTTGTTGCCTATCAATGGGAACAGCATGCCAATACAGAGCTGCCGCCTGTTACGGGTGCAAGCGCCAGTCTTTACGC CTCAGCAGGACTCCTGGTTCTTGCGGACTGGATAGCTTCTGACGAGCACCATTTCCCTGCAAACCCTACGCTTGCGCCCA TAGCTGATGAACAGATCGACAGAGTGGCTCATGATGTTGTTGGCAGTCTTGGTTTTGCTTCACTTGAAATACGCACCGGC CTGAGCTTTGAAGATATCTTCGGCTGCTCACCGTACCCCATGCAGGTCGCCGCATGGTGCAATATTACGGAGCCGGGGAT TTATGTCATTGAAGCGCCTATGGGCATGGGTAAAACAGAGGCTGCGCTTATGGCTGCCTACAAGCTTATGGAGCAGGGCA AGGCGCGTGGGCTGTATTTTGGCCTGCCCACACAGGCCACAAGCAACAGGATTTATGAACGGGTACTGGAATTCATACTG CGAATATCGCCGACTGCGCAAAGGGTGCAGTTGATCCACGGCAACTCATGGCTCCTGGATGACACGCTTGCCATGCCAGA GCAGCAGCAACTGCCTGATGATTCCGCCGCAGATCCAAAAGCAGGCTCCGGTGCCGATCCCTTGCGCTGGTTCTGTTCGT CCCGCCGGGCGTTGCTCGCTCCCGTGGGGGTGGGCACGGCAGATCAGGCCATGCTGGCTGCGCTGGCGGTAAAACACTTT GCCCTTCGCAGGCTTGCCCTTCTGGGCAAAGTGGTCATTCTGGACGAAGTGCACAGCTATGACCACTACACGAGAGCCAT CATACAGCAGCTTTGCAGGGTTCTTGCTGATCTTGGATCAACGGTCATTATCCTTTCCGCCACGCTTTCCGGCTCAGCCC GTTCGGCGCTTTTGCAGTCACACAGCCCTGTTTCCAGCATGGGTGCAGAGGAGGACAGTCTGCCATATCCCTGCATCAGC GGGCGCGCCCATGATCAGGATACCGTGCAGGTTATCCCTTGTACGCCGCCGCCTTCACACACTGTTCATGTGGATTTTCA GCCACTACAGGGCGCCATCAGCCGCACAATCGACATTGCAGCCTCGGGCGGCCAGGTGCTTTGGGTCTGCAATACGGTTG CCAATGCTCAGGAGACGTTTCGCAATATACAAGCTCATGCAGCAGTTACAGACTGCCAGGCAGACATGGGCATTCTGCAT GCCCGACTGCCGTTCTTTATGCGCGAAGAGCGTGAAACGGAATGGATGCAGCGCCTGGGCAAGAAAGGGCAGCGGCAGCG CGGATGTATTCTCGTCTCTACGCAGATTGTGGAGCAGAGCGTGGACCTGGATGCCGATGTGCTGTTCACGGAGCTGGCCC CCACTGACATGCTGCTGCAACGTATGGGCAGGTTATGGCGGCATACACGACGCGACCGCCCGGTTCCCCATCCCTGCATG CATATTATTGCCGAGAATTTTTCCCTGACAGATCTGCTGGATATGAGCGCGCCTGCAATTACAAAAGCGCTGGGCAGCAA AGCCAAGGTGTACGATCCGTTCATTTTATTGCGCACACTTGAGGTGTGGGGCAAGGCTGTATCGGTAACGCTCCCGGACG ACATCCGCAGGTTCATATATGCAACATACACAGAACCTGAATTTCTGACGGAAGCATTGCAGGAACTGTATGACGCGCAG TTTGGTAAAAGTGCAGCCATGAAGATGCAGGCGCAAATTAACACGGATATATGGCGACTCGCTGGTACTGATGTAGAAGA ATACGCGCCCACAAGGCTTTCAGACCATCAGGAATACGGTTTCGTTATGTACCGTAGTAATGTAAAAAATCAGATAACAC TGCTTGATGGCAGTGTTGTTAATGCCAATGACAAGGACTTTCGTAAGGATACGGCTCGCAAACTGCACCGTAACGCAGTC AGGATTCCTGACTACCGTTTGGTGAAAAATCCAGAAAAGTCAAAATTTTTATCTGGTTATAATCTGATGCACTGGATAAA AATTTGTGATGATGGAAACCTGATCCTCCCTTGCCTCAAGAACTCTGCACCACCACACTGGGATAAGGAACTGGGCATCA TATGGCCCAAGCAAAGGAAGTAA
Upstream 100 bases:
>100_bases GCTGTAATCATGAGTCATATATAGCAATTCAATAAGCTATTTGCTATTAATGCATTGCTCTATTATGAGTTGCCTTGTGG TCGCCTTGTATGGAGTACTT
Downstream 100 bases:
>100_bases TCATGAACCTTGTGTCAGATCAGTGGATACCTGTACTGGACAACAGCGGGCAGCACCAGCTTGTCAACCTGCGTGAGGCC CTCTGCGAAGGGGCGCAATG
Product: CRISPR-associated helicase Cas3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 860; Mature: 860
Protein sequence:
>860_residues MEKYTFWAKTYASNLPGISVLLHGRFASAVGRCLVRAMFPPQWQDLHAVVAFLLSIHDVGKISPQFQGKCLLWLEQNGLA REAANNAWPSFTTTHACLSQEILDYFWQQKGLLSESYSLWSAIVGAHHGKWAKAKPHHYGQVSPPCLAPSPSVDWLREEL NFVAYQWEQHANTELPPVTGASASLYASAGLLVLADWIASDEHHFPANPTLAPIADEQIDRVAHDVVGSLGFASLEIRTG LSFEDIFGCSPYPMQVAAWCNITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYFGLPTQATSNRIYERVLEFIL RISPTAQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPKAGSGADPLRWFCSSRRALLAPVGVGTADQAMLAALAVKHF ALRRLALLGKVVILDEVHSYDHYTRAIIQQLCRVLADLGSTVIILSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCIS GRAHDQDTVQVIPCTPPPSHTVHVDFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETFRNIQAHAAVTDCQADMGILH ARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQSVDLDADVLFTELAPTDMLLQRMGRLWRHTRRDRPVPHPCM HIIAENFSLTDLLDMSAPAITKALGSKAKVYDPFILLRTLEVWGKAVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQ FGKSAAMKMQAQINTDIWRLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVVNANDKDFRKDTARKLHRNAV RIPDYRLVKNPEKSKFLSGYNLMHWIKICDDGNLILPCLKNSAPPHWDKELGIIWPKQRK
Sequences:
>Translated_860_residues MEKYTFWAKTYASNLPGISVLLHGRFASAVGRCLVRAMFPPQWQDLHAVVAFLLSIHDVGKISPQFQGKCLLWLEQNGLA REAANNAWPSFTTTHACLSQEILDYFWQQKGLLSESYSLWSAIVGAHHGKWAKAKPHHYGQVSPPCLAPSPSVDWLREEL NFVAYQWEQHANTELPPVTGASASLYASAGLLVLADWIASDEHHFPANPTLAPIADEQIDRVAHDVVGSLGFASLEIRTG LSFEDIFGCSPYPMQVAAWCNITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYFGLPTQATSNRIYERVLEFIL RISPTAQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPKAGSGADPLRWFCSSRRALLAPVGVGTADQAMLAALAVKHF ALRRLALLGKVVILDEVHSYDHYTRAIIQQLCRVLADLGSTVIILSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCIS GRAHDQDTVQVIPCTPPPSHTVHVDFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETFRNIQAHAAVTDCQADMGILH ARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQSVDLDADVLFTELAPTDMLLQRMGRLWRHTRRDRPVPHPCM HIIAENFSLTDLLDMSAPAITKALGSKAKVYDPFILLRTLEVWGKAVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQ FGKSAAMKMQAQINTDIWRLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVVNANDKDFRKDTARKLHRNAV RIPDYRLVKNPEKSKFLSGYNLMHWIKICDDGNLILPCLKNSAPPHWDKELGIIWPKQRK >Mature_860_residues MEKYTFWAKTYASNLPGISVLLHGRFASAVGRCLVRAMFPPQWQDLHAVVAFLLSIHDVGKISPQFQGKCLLWLEQNGLA REAANNAWPSFTTTHACLSQEILDYFWQQKGLLSESYSLWSAIVGAHHGKWAKAKPHHYGQVSPPCLAPSPSVDWLREEL NFVAYQWEQHANTELPPVTGASASLYASAGLLVLADWIASDEHHFPANPTLAPIADEQIDRVAHDVVGSLGFASLEIRTG LSFEDIFGCSPYPMQVAAWCNITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYFGLPTQATSNRIYERVLEFIL RISPTAQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPKAGSGADPLRWFCSSRRALLAPVGVGTADQAMLAALAVKHF ALRRLALLGKVVILDEVHSYDHYTRAIIQQLCRVLADLGSTVIILSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCIS GRAHDQDTVQVIPCTPPPSHTVHVDFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETFRNIQAHAAVTDCQADMGILH ARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQSVDLDADVLFTELAPTDMLLQRMGRLWRHTRRDRPVPHPCM HIIAENFSLTDLLDMSAPAITKALGSKAKVYDPFILLRTLEVWGKAVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQ FGKSAAMKMQAQINTDIWRLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVVNANDKDFRKDTARKLHRNAV RIPDYRLVKNPEKSKFLSGYNLMHWIKICDDGNLILPCLKNSAPPHWDKELGIIWPKQRK
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=643, Percent_Identity=29.8600311041991, Blast_Score=211, Evalue=2e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 95834; Mature: 95834
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKYTFWAKTYASNLPGISVLLHGRFASAVGRCLVRAMFPPQWQDLHAVVAFLLSIHDVG CCCEEEHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC KISPQFQGKCLLWLEQNGLAREAANNAWPSFTTTHACLSQEILDYFWQQKGLLSESYSLW CCCCCCCCCEEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SAIVGAHHGKWAKAKPHHYGQVSPPCLAPSPSVDWLREELNFVAYQWEQHANTELPPVTG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEHHHCCCCCCCCCCC ASASLYASAGLLVLADWIASDEHHFPANPTLAPIADEQIDRVAHDVVGSLGFASLEIRTG CCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC LSFEDIFGCSPYPMQVAAWCNITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYF CCHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEE GLPTQATSNRIYERVLEFILRISPTAQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPK ECCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCEEECHHHCCCCHHCCCCCCCCCCC AGSGADPLRWFCSSRRALLAPVGVGTADQAMLAALAVKHFALRRLALLGKVVILDEVHSY CCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHH DHYTRAIIQQLCRVLADLGSTVIILSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCIS HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCC GRAHDQDTVQVIPCTPPPSHTVHVDFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETF CCCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHEEEEEECCCCEEEEECHHHHHHHHH RNIQAHAAVTDCQADMGILHARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQS HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHH VDLDADVLFTELAPTDMLLQRMGRLWRHTRRDRPVPHPCMHIIAENFSLTDLLDMSAPAI CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCHHH TKALGSKAKVYDPFILLRTLEVWGKAVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQ HHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHEEEECCCHHHHHHHHHHHHHHH FGKSAAMKMQAQINTDIWRLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVV CCCHHHHEEHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCEE NANDKDFRKDTARKLHRNAVRIPDYRLVKNPEKSKFLSGYNLMHWIKICDDGNLILPCLK CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCEEEEECC NSAPPHWDKELGIIWPKQRK CCCCCCCCCCCCEECCCCCC >Mature Secondary Structure MEKYTFWAKTYASNLPGISVLLHGRFASAVGRCLVRAMFPPQWQDLHAVVAFLLSIHDVG CCCEEEHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC KISPQFQGKCLLWLEQNGLAREAANNAWPSFTTTHACLSQEILDYFWQQKGLLSESYSLW CCCCCCCCCEEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SAIVGAHHGKWAKAKPHHYGQVSPPCLAPSPSVDWLREELNFVAYQWEQHANTELPPVTG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEHHHCCCCCCCCCCC ASASLYASAGLLVLADWIASDEHHFPANPTLAPIADEQIDRVAHDVVGSLGFASLEIRTG CCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC LSFEDIFGCSPYPMQVAAWCNITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYF CCHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEE GLPTQATSNRIYERVLEFILRISPTAQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPK ECCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCEEECHHHCCCCHHCCCCCCCCCCC AGSGADPLRWFCSSRRALLAPVGVGTADQAMLAALAVKHFALRRLALLGKVVILDEVHSY CCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHH DHYTRAIIQQLCRVLADLGSTVIILSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCIS HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCC GRAHDQDTVQVIPCTPPPSHTVHVDFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETF CCCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHEEEEEECCCCEEEEECHHHHHHHHH RNIQAHAAVTDCQADMGILHARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQS HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHH VDLDADVLFTELAPTDMLLQRMGRLWRHTRRDRPVPHPCMHIIAENFSLTDLLDMSAPAI CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCHHH TKALGSKAKVYDPFILLRTLEVWGKAVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQ HHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHEEEECCCHHHHHHHHHHHHHHH FGKSAAMKMQAQINTDIWRLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVV CCCHHHHEEHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCEE NANDKDFRKDTARKLHRNAVRIPDYRLVKNPEKSKFLSGYNLMHWIKICDDGNLILPCLK CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCEEEEECC NSAPPHWDKELGIIWPKQRK CCCCCCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]