Click here to switch to the map view.

The map label for this gene is ygcL [C]

Identifier: 220904196

GI number: 220904196

Start: 1077940

End: 1079562

Strand: Direct

Name: ygcL [C]

Synonym: Ddes_0923

Alternate gene names: 220904196

Gene position: 1077940-1079562 (Clockwise)

Preceding gene: 220904195

Following gene: 220904197

Centisome position: 37.51

GC content: 56.62

Gene sequence:

>1623_bases
ATGAACCTTGTGTCAGATCAGTGGATACCTGTACTGGACAACAGCGGGCAGCACCAGCTTGTCAACCTGCGTGAGGCCCT
CTGCGAAGGGGCGCAATGGCGCGATCTGGCCGTACGCCCACACGAGAGGGTGGCCCTGATGCGCCTGCTGCTGTGCATTG
CTCATGCTGCGCTCAATGGCCCGTCTCGGGAAGACTGGTCCCGCGTACCCCAACTGCTGCCGGATGCCGTCGCTGCGTAT
CTGCAGAAATGGCAGGATAGTTTTGACCTGTTCCACCCCCAAAAGCCCTTCTTACAGATTTCCGGCCTTAAAGCGGCAAG
TAAAAAAACAAAACGGACTGAAGATGATGAAGGCCCCCTTGTCAAAGCCAGCAAGCTGGATTTTACCCTGGCCACAGGCA
ATCAGAGTACCCACTTTGACCATGAGGGCAGTTTGGCGCAGCGGTCGGCAGAGCAGGCATTGCCTGCCCTGAACCTTTTG
TCTTACCTGTGCTTCAGCCCCGGCGGCCTCATTGGAACCGTAGTCTGGAACAACCATGTTACCGCGCGAAGTTCCAGCGA
CGGTCCCTGCGCTGTGGGCTCCATGACGCATACGTTCTGGCGGGGCGCAAATGTGCTCCAGACCCTGCACCTCAACATGT
GTGCCCGAGATGACATCGAGCGGCGACTGGCAAGTATTCCCGAGGCCGGCTGGGGAAAGCCTGTGTGGGAACAAATGCCT
GTAAGCTTTGATGATGCAAATGCATGGCGCAACGCAACCCATACGTATCTGGGGCGTTTGACCCCGCTTTCACGCCTTGT
GCTGTTTCAGCGTGGCGCTTCAGGCATGACTCTTGGCGCAGGGCCGGTTTTTCCCAATTTTAACAATGCCAAGGCTCCCT
ATGTGGAAGAACCAACTTCCACAATCATCCTCAGGGGCAAGGACAACAAACAGACACGGGCGCTTTTGCCTGTTACACCG
GGCAAGGCGCTCTGGCGCGAACTGCACGCCCTTGTAGCACATCGCAACAAGGACGATGTGGGGGGATTCTGGGCTGCGGC
TTTAGCCAGCGCTGAAGGTGCATCTGGCAGGGATATGGTTGTGGCGGGCATGGCGAGAGATCAGGCCGAAGTCGTGGACA
CCCTTGAATCCGTTTACCACATACCGCAAGCCATGCAAAAAACTCCAGGGCAACTGGTTTACGGGCAGGGGGTACAATAC
GCCGAAGACATGTCCCGTAAACTGGGCTGGGCTGTGGATACGTACCGTGAAAAAGTGGATGGAGGGTGGGCAGGCAGGCT
CAAAGGGGCTGGAGCAGGTAAGGTGGAGTTGTTGATCAAGCTTCGTCAAAAAGCCTTCACACTGTACTGGACAGCAGCTG
AGCAGAGCCTGCCCCTGCTGTTCGCCTGTGTGGAAAGTCTGGGCAGTGATGCTTTTCCTGCAGCGCAAAAGGCGTGGCAA
AAAGCGCTGTTTGTCGCAGCTCGCAAGGCATATTCCTCCATCTGCGCGCCGCAAACCCCGAGACAGCACAGAGCCTTTGC
CCTTGGCCTTGCCAGGCTCTGCAAACCAGTTGCGACAGCAGCTTCACCAAATATGGCTTCTGAAATTTCTTCCGATACAT
TCCATGAGGAGGACGACGAATGA

Upstream 100 bases:

>100_bases
GTGATGATGGAAACCTGATCCTCCCTTGCCTCAAGAACTCTGCACCACCACACTGGGATAAGGAACTGGGCATCATATGG
CCCAAGCAAAGGAAGTAATC

Downstream 100 bases:

>100_bases
CAGCACTGGTGCAATGGCTGCGGACACAAAAGGAGCGTCGCGGGGTTCTGGCCCAGCTGCGCTGCGGTATTGTGCCCGGC
AAACAGCAAAGAGCATGGCC

Product: Cse1 family CRISPR-associated protein

Products: NA

Alternate protein names: CRISPR-Associated Cse1 Family Protein; Cse1 Family CRISPR-Associated Protein; Crispr-Associated Cse1 Family Protein

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MNLVSDQWIPVLDNSGQHQLVNLREALCEGAQWRDLAVRPHERVALMRLLLCIAHAALNGPSREDWSRVPQLLPDAVAAY
LQKWQDSFDLFHPQKPFLQISGLKAASKKTKRTEDDEGPLVKASKLDFTLATGNQSTHFDHEGSLAQRSAEQALPALNLL
SYLCFSPGGLIGTVVWNNHVTARSSSDGPCAVGSMTHTFWRGANVLQTLHLNMCARDDIERRLASIPEAGWGKPVWEQMP
VSFDDANAWRNATHTYLGRLTPLSRLVLFQRGASGMTLGAGPVFPNFNNAKAPYVEEPTSTIILRGKDNKQTRALLPVTP
GKALWRELHALVAHRNKDDVGGFWAAALASAEGASGRDMVVAGMARDQAEVVDTLESVYHIPQAMQKTPGQLVYGQGVQY
AEDMSRKLGWAVDTYREKVDGGWAGRLKGAGAGKVELLIKLRQKAFTLYWTAAEQSLPLLFACVESLGSDAFPAAQKAWQ
KALFVAARKAYSSICAPQTPRQHRAFALGLARLCKPVATAASPNMASEISSDTFHEEDDE

Sequences:

>Translated_540_residues
MNLVSDQWIPVLDNSGQHQLVNLREALCEGAQWRDLAVRPHERVALMRLLLCIAHAALNGPSREDWSRVPQLLPDAVAAY
LQKWQDSFDLFHPQKPFLQISGLKAASKKTKRTEDDEGPLVKASKLDFTLATGNQSTHFDHEGSLAQRSAEQALPALNLL
SYLCFSPGGLIGTVVWNNHVTARSSSDGPCAVGSMTHTFWRGANVLQTLHLNMCARDDIERRLASIPEAGWGKPVWEQMP
VSFDDANAWRNATHTYLGRLTPLSRLVLFQRGASGMTLGAGPVFPNFNNAKAPYVEEPTSTIILRGKDNKQTRALLPVTP
GKALWRELHALVAHRNKDDVGGFWAAALASAEGASGRDMVVAGMARDQAEVVDTLESVYHIPQAMQKTPGQLVYGQGVQY
AEDMSRKLGWAVDTYREKVDGGWAGRLKGAGAGKVELLIKLRQKAFTLYWTAAEQSLPLLFACVESLGSDAFPAAQKAWQ
KALFVAARKAYSSICAPQTPRQHRAFALGLARLCKPVATAASPNMASEISSDTFHEEDDE
>Mature_540_residues
MNLVSDQWIPVLDNSGQHQLVNLREALCEGAQWRDLAVRPHERVALMRLLLCIAHAALNGPSREDWSRVPQLLPDAVAAY
LQKWQDSFDLFHPQKPFLQISGLKAASKKTKRTEDDEGPLVKASKLDFTLATGNQSTHFDHEGSLAQRSAEQALPALNLL
SYLCFSPGGLIGTVVWNNHVTARSSSDGPCAVGSMTHTFWRGANVLQTLHLNMCARDDIERRLASIPEAGWGKPVWEQMP
VSFDDANAWRNATHTYLGRLTPLSRLVLFQRGASGMTLGAGPVFPNFNNAKAPYVEEPTSTIILRGKDNKQTRALLPVTP
GKALWRELHALVAHRNKDDVGGFWAAALASAEGASGRDMVVAGMARDQAEVVDTLESVYHIPQAMQKTPGQLVYGQGVQY
AEDMSRKLGWAVDTYREKVDGGWAGRLKGAGAGKVELLIKLRQKAFTLYWTAAEQSLPLLFACVESLGSDAFPAAQKAWQ
KALFVAARKAYSSICAPQTPRQHRAFALGLARLCKPVATAASPNMASEISSDTFHEEDDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=110, Percent_Identity=35.4545454545455, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59168; Mature: 59168

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVSDQWIPVLDNSGQHQLVNLREALCEGAQWRDLAVRPHERVALMRLLLCIAHAALNG
CCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PSREDWSRVPQLLPDAVAAYLQKWQDSFDLFHPQKPFLQISGLKAASKKTKRTEDDEGPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCCCCCCCCE
VKASKLDFTLATGNQSTHFDHEGSLAQRSAEQALPALNLLSYLCFSPGGLIGTVVWNNHV
EEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEE
TARSSSDGPCAVGSMTHTFWRGANVLQTLHLNMCARDDIERRLASIPEAGWGKPVWEQMP
EECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
VSFDDANAWRNATHTYLGRLTPLSRLVLFQRGASGMTLGAGPVFPNFNNAKAPYVEEPTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
TIILRGKDNKQTRALLPVTPGKALWRELHALVAHRNKDDVGGFWAAALASAEGASGRDMV
EEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEE
VAGMARDQAEVVDTLESVYHIPQAMQKTPGQLVYGQGVQYAEDMSRKLGWAVDTYREKVD
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHC
GGWAGRLKGAGAGKVELLIKLRQKAFTLYWTAAEQSLPLLFACVESLGSDAFPAAQKAWQ
CCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHH
KALFVAARKAYSSICAPQTPRQHRAFALGLARLCKPVATAASPNMASEISSDTFHEEDDE
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNLVSDQWIPVLDNSGQHQLVNLREALCEGAQWRDLAVRPHERVALMRLLLCIAHAALNG
CCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PSREDWSRVPQLLPDAVAAYLQKWQDSFDLFHPQKPFLQISGLKAASKKTKRTEDDEGPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCCCCCCCCE
VKASKLDFTLATGNQSTHFDHEGSLAQRSAEQALPALNLLSYLCFSPGGLIGTVVWNNHV
EEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEE
TARSSSDGPCAVGSMTHTFWRGANVLQTLHLNMCARDDIERRLASIPEAGWGKPVWEQMP
EECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
VSFDDANAWRNATHTYLGRLTPLSRLVLFQRGASGMTLGAGPVFPNFNNAKAPYVEEPTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
TIILRGKDNKQTRALLPVTPGKALWRELHALVAHRNKDDVGGFWAAALASAEGASGRDMV
EEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEE
VAGMARDQAEVVDTLESVYHIPQAMQKTPGQLVYGQGVQYAEDMSRKLGWAVDTYREKVD
EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHC
GGWAGRLKGAGAGKVELLIKLRQKAFTLYWTAAEQSLPLLFACVESLGSDAFPAAQKAWQ
CCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHH
KALFVAARKAYSSICAPQTPRQHRAFALGLARLCKPVATAASPNMASEISSDTFHEEDDE
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA