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The map label for this gene is pal [H]

Identifier: 220904130

GI number: 220904130

Start: 1004545

End: 1005012

Strand: Reverse

Name: pal [H]

Synonym: Ddes_0857

Alternate gene names: 220904130

Gene position: 1005012-1004545 (Counterclockwise)

Preceding gene: 220904131

Following gene: 220904129

Centisome position: 34.98

GC content: 57.05

Gene sequence:

>468_bases
ATGAAACGCTACGCTCTTATTCTCGCTTTGGTCATGGCTCTGGCTGCCGGTTTTGGTTGTGCAAAGAAAACCACTGGCGA
ACCTGGCTATGATGATGGCATGACCCCTGAAATGCGCGCTGCCGTCCAGCAGATCACTGATGGCCGCGTGTACTTCGCCT
TCGACAAATTCAACGTTGAAAACCAGTACAAAGAAATGCTGAAGCAGAAGGGCGACCTTCTGAAGCAGTACCCCGCCATC
CGCGTTCGCATCGAAGGCAACTGCGACGATCGCGGCACCCAGGAATACAACCTCGCCCTTGGCGAGCGCCGCGCCCGCGC
TGCGTATGAGTACCTGGTCATGATGGGCGTGAACCCCAACCAGCTTGAAATGATCAGCTACGGCAAGGAAAACCCCGCCG
TGCAGGGTAACAACGAAGCCGCCTGGGCCAAGAACCGCCGCGACGACTTCCGCGTTATCGCTCACTAG

Upstream 100 bases:

>100_bases
CGGTGCGGATACCATCTGTAATGCAAGGGCAATGCGCCCTTACGTGTGCAGAAAGGAAAGGTATTAATTTCTTGGAGAAT
GAGCTGTTCAGGAGGACACA

Downstream 100 bases:

>100_bases
ACCCCGGTCTTTGTGACGAATGCAAGGCCACCCGCAAGGGTGGCCTTTTCTGTTTCTCTGCGGCAATTGCGCCAACCTGC
CACGCGCACCCTGCCTGCGG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKRYALILALVMALAAGFGCAKKTTGEPGYDDGMTPEMRAAVQQITDGRVYFAFDKFNVENQYKEMLKQKGDLLKQYPAI
RVRIEGNCDDRGTQEYNLALGERRARAAYEYLVMMGVNPNQLEMISYGKENPAVQGNNEAAWAKNRRDDFRVIAH

Sequences:

>Translated_155_residues
MKRYALILALVMALAAGFGCAKKTTGEPGYDDGMTPEMRAAVQQITDGRVYFAFDKFNVENQYKEMLKQKGDLLKQYPAI
RVRIEGNCDDRGTQEYNLALGERRARAAYEYLVMMGVNPNQLEMISYGKENPAVQGNNEAAWAKNRRDDFRVIAH
>Mature_155_residues
MKRYALILALVMALAAGFGCAKKTTGEPGYDDGMTPEMRAAVQQITDGRVYFAFDKFNVENQYKEMLKQKGDLLKQYPAI
RVRIEGNCDDRGTQEYNLALGERRARAAYEYLVMMGVNPNQLEMISYGKENPAVQGNNEAAWAKNRRDDFRVIAH

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=47.9591836734694, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17566; Mature: 17566

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYALILALVMALAAGFGCAKKTTGEPGYDDGMTPEMRAAVQQITDGRVYFAFDKFNVE
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCH
NQYKEMLKQKGDLLKQYPAIRVRIEGNCDDRGTQEYNLALGERRARAAYEYLVMMGVNPN
HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHEEECCCCC
QLEMISYGKENPAVQGNNEAAWAKNRRDDFRVIAH
CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MKRYALILALVMALAAGFGCAKKTTGEPGYDDGMTPEMRAAVQQITDGRVYFAFDKFNVE
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCH
NQYKEMLKQKGDLLKQYPAIRVRIEGNCDDRGTQEYNLALGERRARAAYEYLVMMGVNPN
HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHEEECCCCC
QLEMISYGKENPAVQGNNEAAWAKNRRDDFRVIAH
CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]