| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is rnr [H]
Identifier: 220904011
GI number: 220904011
Start: 868362
End: 870920
Strand: Reverse
Name: rnr [H]
Synonym: Ddes_0737
Alternate gene names: 220904011
Gene position: 870920-868362 (Counterclockwise)
Preceding gene: 220904012
Following gene: 220904010
Centisome position: 30.31
GC content: 63.97
Gene sequence:
>2559_bases ATGAAAAAGCAAAAAAAACTTCGCGGAACCACTACGGCTTCCGCCCCTGCCAGCGGCGGTTTTCCCTCGACTGAGGAACT GCTGCAAACCCTTGCCGCCCAAAACCGCCCCATGCGGCTGGACGGCCTTTTGCGTGTTCTGGGCCTTGCCCGGCGCGAAA GAAAAGAACTTGAAGCCGCCCTTGATGATCTGGAGCGGCAAGGCAGCGCCCTGCGGCTGCGTGGCGGCCTGTGGACGCGC CCTGAAAACCTGAAAAGCATTACGGGACGCTTCAGCGCCCTGCGCGAAGGCGCGGGCTTTGTAACCCCCATGCGGCTGGC TGCCGATGACGAACAGGAAAGCCCCCGGTGGCAGTTTTCCGGCGGCAAGGATATTTATATCCCTTCGGCCCAAAACGGCG GTGCATGGCATCAGGATCTGGTGCGCGTGGCCCTTTCACCCGGTGCGCAGCGCGGCCCTTCACCTGAAGGGCGCATCGTT GAAATAGTTGAGCGCGGCCTCAAGGAAGTACCCGCCCACGTGGTGCACCGCCACGGCAACAGCCTGTTCTGCCGCCCCGC GGACAGCAGACTGCCTGCCGATTTTAACGTGGAACTGCCCGCAGGCTCCGAAGCTCCCGCCCAGGGAACCCTTGTGCTGC TGGCCCCACTCAAGCCGCTGGCTTCAGACCTGTGGAGCGCGACACTTCTGGGCAACTACGGGCGCGAAGATGACGTGGCC GTGCAGGAAGAGCTGGTCAAGCTCAACCACGAGGTCCCTCGTGATTTTCCTGCCGGGGCACTGGCCGAGGCCGAAGCCCT GCCCGGCGAAGCCGATTTCAAGGGACGCAGGGACGTGCGTGACCTTGCCCTTGTGACCATTGACGGCGCGGACGCCCGCG ACTTTGACGATGCCGTTCATGTCGAGGAGCAGCCCGGCGGCAAGGGCTGGGTCTTGCGCGTTGCCATAGCCGACGTGAGC CACTATGTGCGCCCGCGCGGGCGCGGCTGCCCCGGCGCCCTTGATGCCGAGGCCCTGTCGCGCGGCAACTCATGGTATTT CCCCCGCTCTGTGGAACCGATGCTGCCCGAAGTGCTGTCCAACGGCCTGTGCAGCCTGCGTCCCCACGTGAACCGTCTGG CCGTACTGGCCGAAATTCCCTTTACCGCTGCGGGCAAGCCCGGTAAACCGCGTTTCTCTGAAGTGGTCATGCGTTCGGCT GCCCGCCTGACCTATGATCAGGTCAAGGCCTGCATACTTGATAAGGATGAAGCCGCCCTTGCGGAGCTGCGCACCGAAGA ACGCGGTGAAGAAGTGCTTGCCATGCTGGACAAGGCCTTTGCACTGTATACGGTTTTGCGCGACGTGCGCCGTCAGCGCG GCACGCTGGACTTTGACCTGCCCGAAGCCCAAAGCCGCCTGGACGACCTTGGCCGTGTGGTCTGGCTCGGCCACCGGGAG CGCAACGATGCGCACAGGCTTATCGAAGAATTCATGATCGCGGCCAACGAGGCCGTGGCCCGCCACCTGCGCGACGCGGA CATTCCCTTTCTTTACCGTGTTCACCCCGACCCCGATCCCGAAAGGCTGGAAAGCCTCTTTGACACGCTGGCAGCCACAG GCATTGAAAACCTGCCGCCCAAGCCCTCGCCTGCCGCCATGCAGGGCATTCTTGCCGCTGCCCAAGGGACGCCACAGGAA TTCCTCGTCAACCGCCTCTGTCTGCGCGCCATGCCCCAGGCCCGGTACATGCCGTTTAACGAAGGGCATTTTGGCCTGGC CTCCACGGCATACTGCCACTTTACCTCGCCCATCCGCCGTTATGCCGACCTGCTCACGCACAGGGCGCTCAAAATGTCGC TGGGGCTGGATTCGGGACCACTGCCTGCCGGTGAAAAGCTTTTGCGTATCGGCGACCAGATCAACCGGCGCGAGCGGGCG GCCATGGCCTGCGAACGCGAGATGGACCGCCGCCTTGGCTGCCTTGCCCTGTTGCCCCGCGTGGGCGAGCACTTCAGCGG TATTGTGGCGGGCGTGACGGACTTTGGCGTTTTTGTGGAGCTGGAAGCCATGCCCGTGGAAGGCATGATTCGCGTGGAAG ACCTGGGCGATGACTGGTACGACTTTGACGCCCGCCTCATGAGCCTTGTGGGGCAACGCTCTGGCGTACAGTGGCGCATG GGCCAAAAGCTTGAGGTCGCCCTGTCTGAAGTGCATCTGGGCCGTCTTGAAATCCGCCTCATGCCGCTGGAACTGCCCAA GGGCATCGGCGGGCGCGGGGCGCGCAGTCCGCGCGGTTCGCGCGGCAGAGGCTCGCCTGCCGGCCGTGCTGCGGGCGGCC GCAAAGGCTCCAGTTCCGGCTGGAAGCTGGTTTCCCCCGGTGACGGCGAAAGCCGCGGCAGAAACGACAAGCCCGCTAAA AATGGCAAGAACGGCAAAAAGAGCGGCGCGGGCAAATCGGGCCACTCCGGTCAGCCTGGCGGTCAGTCGGCCCGCAAGGG CAAAAACGGCACGGGCACACCCGCAAAATCCGGCAGGCCCGTCAGAAGCGGTAAAAAAACAGCAGGTAAGCGCGGCTGA
Upstream 100 bases:
>100_bases ATTGCCGCAATTCGGGCAACAGCTGAGAGCAGGTACGCGATGGGGGGCGAAAGGCCAGGCCTTTTGCCCCTTTTTCACGC CTTGCCAGTGAACAATTTTT
Downstream 100 bases:
>100_bases TGGGTCTTTTGTCCGCCAAACAGCGCATGGGTGCGGCGGCCCTTATACTGGCCGCCAGCACCATCATTTCGCGCCTCATG GGCCTTGTTCGCGACAAGGT
Product: ribonuclease R
Products: NA
Alternate protein names: RNase R; VacB protein homolog [H]
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MKKQKKLRGTTTASAPASGGFPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKELEAALDDLERQGSALRLRGGLWTR PENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQDLVRVALSPGAQRGPSPEGRIV EIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVELPAGSEAPAQGTLVLLAPLKPLASDLWSATLLGNYGREDDVA VQEELVKLNHEVPRDFPAGALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVAIADVS HYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAVLAEIPFTAAGKPGKPRFSEVVMRSA ARLTYDQVKACILDKDEAALAELRTEERGEEVLAMLDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRE RNDAHRLIEEFMIAANEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIENLPPKPSPAAMQGILAAAQGTPQE FLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSLGLDSGPLPAGEKLLRIGDQINRRERA AMACEREMDRRLGCLALLPRVGEHFSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRM GQKLEVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRKGSSSGWKLVSPGDGESRGRNDKPAK NGKNGKKSGAGKSGHSGQPGGQSARKGKNGTGTPAKSGRPVRSGKKTAGKRG
Sequences:
>Translated_852_residues MKKQKKLRGTTTASAPASGGFPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKELEAALDDLERQGSALRLRGGLWTR PENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQDLVRVALSPGAQRGPSPEGRIV EIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVELPAGSEAPAQGTLVLLAPLKPLASDLWSATLLGNYGREDDVA VQEELVKLNHEVPRDFPAGALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVAIADVS HYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAVLAEIPFTAAGKPGKPRFSEVVMRSA ARLTYDQVKACILDKDEAALAELRTEERGEEVLAMLDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRE RNDAHRLIEEFMIAANEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIENLPPKPSPAAMQGILAAAQGTPQE FLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSLGLDSGPLPAGEKLLRIGDQINRRERA AMACEREMDRRLGCLALLPRVGEHFSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRM GQKLEVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRKGSSSGWKLVSPGDGESRGRNDKPAK NGKNGKKSGAGKSGHSGQPGGQSARKGKNGTGTPAKSGRPVRSGKKTAGKRG >Mature_852_residues MKKQKKLRGTTTASAPASGGFPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKELEAALDDLERQGSALRLRGGLWTR PENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQDLVRVALSPGAQRGPSPEGRIV EIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVELPAGSEAPAQGTLVLLAPLKPLASDLWSATLLGNYGREDDVA VQEELVKLNHEVPRDFPAGALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVAIADVS HYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAVLAEIPFTAAGKPGKPRFSEVVMRSA ARLTYDQVKACILDKDEAALAELRTEERGEEVLAMLDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRE RNDAHRLIEEFMIAANEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIENLPPKPSPAAMQGILAAAQGTPQE FLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSLGLDSGPLPAGEKLLRIGDQINRRERA AMACEREMDRRLGCLALLPRVGEHFSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRM GQKLEVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRKGSSSGWKLVSPGDGESRGRNDKPAK NGKNGKKSGAGKSGHSGQPGGQSARKGKNGTGTPAKSGRPVRSGKKTAGKRG
Specific function: 3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs [H]
COG id: COG0557
COG function: function code K; Exoribonuclease R
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI190014625, Length=527, Percent_Identity=30.1707779886148, Blast_Score=176, Evalue=7e-44, Organism=Homo sapiens, GI190014623, Length=530, Percent_Identity=30.5660377358491, Blast_Score=176, Evalue=1e-43, Organism=Homo sapiens, GI134288890, Length=526, Percent_Identity=30.2281368821293, Blast_Score=146, Evalue=1e-34, Organism=Homo sapiens, GI19115966, Length=415, Percent_Identity=30.1204819277108, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI219521928, Length=415, Percent_Identity=30.1204819277108, Blast_Score=127, Evalue=4e-29, Organism=Escherichia coli, GI87082383, Length=753, Percent_Identity=35.7237715803453, Blast_Score=372, Evalue=1e-104, Organism=Escherichia coli, GI1787542, Length=553, Percent_Identity=27.6672694394213, Blast_Score=108, Evalue=1e-24, Organism=Caenorhabditis elegans, GI212645896, Length=623, Percent_Identity=27.9293739967897, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17553506, Length=447, Percent_Identity=29.7539149888143, Blast_Score=151, Evalue=1e-36, Organism=Saccharomyces cerevisiae, GI6324552, Length=454, Percent_Identity=29.9559471365639, Blast_Score=153, Evalue=9e-38, Organism=Drosophila melanogaster, GI24649634, Length=555, Percent_Identity=28.4684684684685, Blast_Score=162, Evalue=9e-40, Organism=Drosophila melanogaster, GI19922976, Length=399, Percent_Identity=30.0751879699248, Blast_Score=138, Evalue=1e-32, Organism=Drosophila melanogaster, GI24654597, Length=399, Percent_Identity=30.0751879699248, Blast_Score=138, Evalue=1e-32, Organism=Drosophila melanogaster, GI24654592, Length=399, Percent_Identity=30.0751879699248, Blast_Score=138, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011805 [H]
Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 92689; Mature: 92689
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQKKLRGTTTASAPASGGFPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKELEAA CCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LDDLERQGSALRLRGGLWTRPENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFS HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECC GGKDIYIPSAQNGGAWHQDLVRVALSPGAQRGPSPEGRIVEIVERGLKEVPAHVVHRHGN CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC SLFCRPADSRLPADFNVELPAGSEAPAQGTLVLLAPLKPLASDLWSATLLGNYGREDDVA EEEECCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHH VQEELVKLNHEVPRDFPAGALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVH HHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEE VEEQPGGKGWVLRVAIADVSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLS CCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH NGLCSLRPHVNRLAVLAEIPFTAAGKPGKPRFSEVVMRSAARLTYDQVKACILDKDEAAL CCCEECCCCHHHEEHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AELRTEERGEEVLAMLDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCC RNDAHRLIEEFMIAANEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIENLPP CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC KPSPAAMQGILAAAQGTPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRR CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEHHHHHHH YADLLTHRALKMSLGLDSGPLPAGEKLLRIGDQINRRERAAMACEREMDRRLGCLALLPR HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGEHFSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRM HHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC GQKLEVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRKGSSSG CCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC WKLVSPGDGESRGRNDKPAKNGKNGKKSGAGKSGHSGQPGGQSARKGKNGTGTPAKSGRP CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC VRSGKKTAGKRG CCCCCCCCCCCC >Mature Secondary Structure MKKQKKLRGTTTASAPASGGFPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKELEAA CCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LDDLERQGSALRLRGGLWTRPENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFS HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECC GGKDIYIPSAQNGGAWHQDLVRVALSPGAQRGPSPEGRIVEIVERGLKEVPAHVVHRHGN CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC SLFCRPADSRLPADFNVELPAGSEAPAQGTLVLLAPLKPLASDLWSATLLGNYGREDDVA EEEECCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHH VQEELVKLNHEVPRDFPAGALAEAEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVH HHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEE VEEQPGGKGWVLRVAIADVSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLS CCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH NGLCSLRPHVNRLAVLAEIPFTAAGKPGKPRFSEVVMRSAARLTYDQVKACILDKDEAAL CCCEECCCCHHHEEHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH AELRTEERGEEVLAMLDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCC RNDAHRLIEEFMIAANEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIENLPP CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC KPSPAAMQGILAAAQGTPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRR CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEHHHHHHH YADLLTHRALKMSLGLDSGPLPAGEKLLRIGDQINRRERAAMACEREMDRRLGCLALLPR HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGEHFSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRM HHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC GQKLEVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRKGSSSG CCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC WKLVSPGDGESRGRNDKPAKNGKNGKKSGAGKSGHSGQPGGQSARKGKNGTGTPAKSGRP CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC VRSGKKTAGKRG CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]