| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
Click here to switch to the map view.
The map label for this gene is hisJ [H]
Identifier: 220903863
GI number: 220903863
Start: 713268
End: 714011
Strand: Direct
Name: hisJ [H]
Synonym: Ddes_0588
Alternate gene names: 220903863
Gene position: 713268-714011 (Clockwise)
Preceding gene: 220903862
Following gene: 220903864
Centisome position: 24.82
GC content: 55.65
Gene sequence:
>744_bases ATGCTTCGCCGAATGACACTCGCCTTCGCTGGTTTTGTTCTGATGTGCAGCTCTGCTATGGCCGCTGAAAAAATCGTGGT CGCCAGCGACTGTACCTGGCCACCCATGGAAATGCTTGATGCCAACAAGAAACCCGAAGGGTACTCCAGCGATTACCTGC GGGCCGTAGGCAAGGCCGCAGGTCTTGATATGGACATCCGCAACGTGGCCTGGGACGGTATTTTCGGCGGTGTGGCCACC GGGCAGTACGATGTTGTGGCCTCTTCCGTCACCATTACGCCCGAACGCCAGAAACAGTTTGACTTCACCGAGCCTTACTA TGAGGTTGTGCAGGCCGTGGTGCTGCCCGAAGGGCAGAGCGTCAAGAGCCTGGCCGACCTCAAGGGCAAAAAGGTGGGCG GCCAGATCGGCACCACCGGCATCTTTGTGACCCGTAAGGCCGATGTCGGCGCTGACATCAAGGAATATGACGACGTGGGC CTGGCTATTCAGGACCTGGTCAATGGCCGCATTGATGCGGTGGTCTGTGATGACCCGGTAGCCATGTACTATGTGAACAA AAAGGCCGACACCGCCGGCAAGCTGAACCTTTCTTACAAGACCGACGAAAAGGAATACTACGGCTTTACCGTGCGCAAGG GCCGCAAGGACCTTTTGGACAAGCTCAATAAAGGCATCAGAGAAGTAAAGGCATCCGGTGAGGAAGCCAGGATAATTGAA AAGTGGATGGGCAAATCCAACTAG
Upstream 100 bases:
>100_bases ATTCAGCCGTGGCCTTCCGCCGCGGGGAATATCCCGGGGCAGGCTTTTCCACTGGCGCTGTGGGCGGCGGGCTTTGACGG AAACCATTTAAGGAGGTCCC
Downstream 100 bases:
>100_bases CCCACAGGGGACGCGCCGGTACTTCCGGCGGAGTCCGTCGCATGAAGGAGGTTTCATGATACGTCGTTTTGCTTTCGCCC TGCTGGTTCTGACCCTGTTT
Product: family 3 extracellular solute-binding protein
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: HBP [H]
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MLRRMTLAFAGFVLMCSSAMAAEKIVVASDCTWPPMEMLDANKKPEGYSSDYLRAVGKAAGLDMDIRNVAWDGIFGGVAT GQYDVVASSVTITPERQKQFDFTEPYYEVVQAVVLPEGQSVKSLADLKGKKVGGQIGTTGIFVTRKADVGADIKEYDDVG LAIQDLVNGRIDAVVCDDPVAMYYVNKKADTAGKLNLSYKTDEKEYYGFTVRKGRKDLLDKLNKGIREVKASGEEARIIE KWMGKSN
Sequences:
>Translated_247_residues MLRRMTLAFAGFVLMCSSAMAAEKIVVASDCTWPPMEMLDANKKPEGYSSDYLRAVGKAAGLDMDIRNVAWDGIFGGVAT GQYDVVASSVTITPERQKQFDFTEPYYEVVQAVVLPEGQSVKSLADLKGKKVGGQIGTTGIFVTRKADVGADIKEYDDVG LAIQDLVNGRIDAVVCDDPVAMYYVNKKADTAGKLNLSYKTDEKEYYGFTVRKGRKDLLDKLNKGIREVKASGEEARIIE KWMGKSN >Mature_247_residues MLRRMTLAFAGFVLMCSSAMAAEKIVVASDCTWPPMEMLDANKKPEGYSSDYLRAVGKAAGLDMDIRNVAWDGIFGGVAT GQYDVVASSVTITPERQKQFDFTEPYYEVVQAVVLPEGQSVKSLADLKGKKVGGQIGTTGIFVTRKADVGADIKEYDDVG LAIQDLVNGRIDAVVCDDPVAMYYVNKKADTAGKLNLSYKTDEKEYYGFTVRKGRKDLLDKLNKGIREVKASGEEARIIE KWMGKSN
Specific function: Component of the high-affinity histidine permease, a binding-protein-dependent transport system. The other components are proteins hisQ, hisM, and hisP [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787085, Length=249, Percent_Identity=34.9397590361446, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1788228, Length=222, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1787088, Length=240, Percent_Identity=34.5833333333333, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787031, Length=244, Percent_Identity=30.327868852459, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1788648, Length=228, Percent_Identity=25, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 27081; Mature: 27081
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRMTLAFAGFVLMCSSAMAAEKIVVASDCTWPPMEMLDANKKPEGYSSDYLRAVGKAA CCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHC GLDMDIRNVAWDGIFGGVATGQYDVVASSVTITPERQKQFDFTEPYYEVVQAVVLPEGQS CCCCHHHHHHHCCHHCCCCCCCEEEEEEEEEECCCHHCCCCCCCHHHHHHHHHHCCCCCC VKSLADLKGKKVGGQIGTTGIFVTRKADVGADIKEYDDVGLAIQDLVNGRIDAVVCDDPV HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHCCCEEEEEECCCE AMYYVNKKADTAGKLNLSYKTDEKEYYGFTVRKGRKDLLDKLNKGIREVKASGEEARIIE EEEEEECCCCCCCEEEEEEECCCCHHCCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHH KWMGKSN HHCCCCC >Mature Secondary Structure MLRRMTLAFAGFVLMCSSAMAAEKIVVASDCTWPPMEMLDANKKPEGYSSDYLRAVGKAA CCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHC GLDMDIRNVAWDGIFGGVATGQYDVVASSVTITPERQKQFDFTEPYYEVVQAVVLPEGQS CCCCHHHHHHHCCHHCCCCCCCEEEEEEEEEECCCHHCCCCCCCHHHHHHHHHHCCCCCC VKSLADLKGKKVGGQIGTTGIFVTRKADVGADIKEYDDVGLAIQDLVNGRIDAVVCDDPV HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHCCCEEEEEECCCE AMYYVNKKADTAGKLNLSYKTDEKEYYGFTVRKGRKDLLDKLNKGIREVKASGEEARIIE EEEEEECCCCCCCEEEEEEECCCCHHCCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHH KWMGKSN HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1448614 [H]