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The map label for this gene is yddU [C]

Identifier: 220903699

GI number: 220903699

Start: 511632

End: 513356

Strand: Reverse

Name: yddU [C]

Synonym: Ddes_0421

Alternate gene names: 220903699

Gene position: 513356-511632 (Counterclockwise)

Preceding gene: 220903701

Following gene: 220903697

Centisome position: 17.87

GC content: 54.72

Gene sequence:

>1725_bases
ATGAACCGGATCGCACCAACCATATTCTTTTTGGGCATCATCTTCACGCTGCCGTCAGCACAGCCGTTTGCCGACAAAGC
CTTTGCCCGTCAGGCGGACCTGTCGCTCCCCATGCGGCGGCAGGTTGCCTCATTTTTCCCTGCCGGCACCCTCCGCACAC
TGCAAAGCACCGGGCCGTCCACCTTCAATCTGCACATGGCTGGCAACAGCACCACTGCTTCAGGCACAACAGGAGAAACC
GCGGCAAGGCCTGACGCCGATCCGGCAGACGAGGCAGCCGGAGCAGCGGATCAGGATGAACCGTTGTTATTTCATCAGAA
CAAACCTGTTATCTTTCTTGCGGTGACGATACTTGCAGCCTTCGGCTATCAGGGCCTTGCATCGCATAAAAAAAAGAAGC
TTTCAAAATTGCAGAACTGTGATGCCCTTACCGGTCTGCATAATCTGCACAGCTTTAAAAACGAATGCATCGCGCACCTC
AGACAAAAAGACGGACACTCACACGCCATTGTACAGTTCGATATCAGCAGGTTCAAACTCATCAATGACAAATTCGGCTT
TACAGAAGGAGACAGCCTGCTGTGCGTGTGCGGCGAGGCGCTCCACTCCGCCCTGGCGGACACAGAGTTTTGCGCCCGAA
GCTTTGCAGACCAGTTTACCGCCTTTCTTCGCTATGACGACCTGCACTCCCTGAAAGAACGCATTTACAGCATCATCAAT
ACCATTGAGCAGTGGCGTGCCGGGAGCGGCATGCCCACCAGGATAGAACTGCGCTGCGGGGTATATATCCTCGACAGGCA
CAGCCACACCCTCGATGACATCCAGCAGGCCATGGATCTGGCGGGCTATGCGTTGCAGGAATCGAAAAAACGCGGAAAAA
GCAAGATGGTGCTCTATGATGAAAGCATGCGCAAGACATCGCTGCTCCATCAGGACCTCAAGGACAGCATCACCACGGCT
CTGGAGCGGGAGGAGCTGAAAGTATGGTTTCAGCCCAAGGTGAACATGCTCTCCAATTCCGTGATCGGCAGCGAAGCCCT
CGCGCGCTGGTACCATCCGGTGCACGGCCTTCTGCTGCCGGGGAAATTCATGCCTCTTTTTGAGCACAGCGGCGATGTAC
TGCGTGTGGATTTTTACATTTTTGAACAGGTCTGCAAAACCATACATCAATGGGAACGCGACGGCATCATGGCAAGCACC
GTATCGTGCAATTTTTCAAGCCAGCACTTCGAGCGCCCGGAATTCTGCCGCCGGCTGGTAGAAATCGCCTCACGGCACTC
CGTACCCCATGAGCTTCTTGAAGTGGAAATCACGGAAAGCACCATGCTGCAAAACCCAGATGCGGCCAATATACAGATAA
AACGCCTTCGGGATCTGGGCTTCAGGACAACCATTGACGACTTTGGCTCCGGCTATTCCTCGCTTGGCCTGCTGCAGCTT
TTCGCTGCCGACGTCATCAAGTTTGACAGAAGTTTTGTAAAACGGAATATCGCTGGCAAAAGGGCGCAGATCGTGCTTGG
CAGCATGATAGAGCTGACGCGCCAGCTTGGTATGAGCGCCATCTGCGAAGGTGTCGAAACGAAGGAGCAGGCCAGTATCC
TCATGCAGCACGGCTGCTATAATGCCCAGGGCTTCTACTACGCGCGGCCCATGCCCGCAGACCAGTTTAAAAAACTGCTG
CGCGTGGGGCGGATTTCGCCCGAAAGAGCCGGCAGTACGGCATGA

Upstream 100 bases:

>100_bases
GCCCGAACGCTTCCAGTTTATGGAAAGTCCCCTCCGCCCAAGCCGCAAGCCCGGCTGACGGGCACACAGTAATTGACCTC
AGGACAGCACGAGGCGCTTC

Downstream 100 bases:

>100_bases
CCCAAAACACTCATGCTGTAGCGTACGCAGACAAAAACGCCCCGGCCAGATGTGCTCTGGCCGGGGACCGTTTGGCAGCC
CCGTTGTGCGCCGTTGCCCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MNRIAPTIFFLGIIFTLPSAQPFADKAFARQADLSLPMRRQVASFFPAGTLRTLQSTGPSTFNLHMAGNSTTASGTTGET
AARPDADPADEAAGAADQDEPLLFHQNKPVIFLAVTILAAFGYQGLASHKKKKLSKLQNCDALTGLHNLHSFKNECIAHL
RQKDGHSHAIVQFDISRFKLINDKFGFTEGDSLLCVCGEALHSALADTEFCARSFADQFTAFLRYDDLHSLKERIYSIIN
TIEQWRAGSGMPTRIELRCGVYILDRHSHTLDDIQQAMDLAGYALQESKKRGKSKMVLYDESMRKTSLLHQDLKDSITTA
LEREELKVWFQPKVNMLSNSVIGSEALARWYHPVHGLLLPGKFMPLFEHSGDVLRVDFYIFEQVCKTIHQWERDGIMAST
VSCNFSSQHFERPEFCRRLVEIASRHSVPHELLEVEITESTMLQNPDAANIQIKRLRDLGFRTTIDDFGSGYSSLGLLQL
FAADVIKFDRSFVKRNIAGKRAQIVLGSMIELTRQLGMSAICEGVETKEQASILMQHGCYNAQGFYYARPMPADQFKKLL
RVGRISPERAGSTA

Sequences:

>Translated_574_residues
MNRIAPTIFFLGIIFTLPSAQPFADKAFARQADLSLPMRRQVASFFPAGTLRTLQSTGPSTFNLHMAGNSTTASGTTGET
AARPDADPADEAAGAADQDEPLLFHQNKPVIFLAVTILAAFGYQGLASHKKKKLSKLQNCDALTGLHNLHSFKNECIAHL
RQKDGHSHAIVQFDISRFKLINDKFGFTEGDSLLCVCGEALHSALADTEFCARSFADQFTAFLRYDDLHSLKERIYSIIN
TIEQWRAGSGMPTRIELRCGVYILDRHSHTLDDIQQAMDLAGYALQESKKRGKSKMVLYDESMRKTSLLHQDLKDSITTA
LEREELKVWFQPKVNMLSNSVIGSEALARWYHPVHGLLLPGKFMPLFEHSGDVLRVDFYIFEQVCKTIHQWERDGIMAST
VSCNFSSQHFERPEFCRRLVEIASRHSVPHELLEVEITESTMLQNPDAANIQIKRLRDLGFRTTIDDFGSGYSSLGLLQL
FAADVIKFDRSFVKRNIAGKRAQIVLGSMIELTRQLGMSAICEGVETKEQASILMQHGCYNAQGFYYARPMPADQFKKLL
RVGRISPERAGSTA
>Mature_574_residues
MNRIAPTIFFLGIIFTLPSAQPFADKAFARQADLSLPMRRQVASFFPAGTLRTLQSTGPSTFNLHMAGNSTTASGTTGET
AARPDADPADEAAGAADQDEPLLFHQNKPVIFLAVTILAAFGYQGLASHKKKKLSKLQNCDALTGLHNLHSFKNECIAHL
RQKDGHSHAIVQFDISRFKLINDKFGFTEGDSLLCVCGEALHSALADTEFCARSFADQFTAFLRYDDLHSLKERIYSIIN
TIEQWRAGSGMPTRIELRCGVYILDRHSHTLDDIQQAMDLAGYALQESKKRGKSKMVLYDESMRKTSLLHQDLKDSITTA
LEREELKVWFQPKVNMLSNSVIGSEALARWYHPVHGLLLPGKFMPLFEHSGDVLRVDFYIFEQVCKTIHQWERDGIMAST
VSCNFSSQHFERPEFCRRLVEIASRHSVPHELLEVEITESTMLQNPDAANIQIKRLRDLGFRTTIDDFGSGYSSLGLLQL
FAADVIKFDRSFVKRNIAGKRAQIVLGSMIELTRQLGMSAICEGVETKEQASILMQHGCYNAQGFYYARPMPADQFKKLL
RVGRISPERAGSTA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=25.1162790697674, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI1787541, Length=438, Percent_Identity=27.3972602739726, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI226510982, Length=274, Percent_Identity=30.6569343065693, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=30.2788844621514, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=31.0204081632653, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=29.3388429752066, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI87081845, Length=263, Percent_Identity=30.0380228136882, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87081743, Length=254, Percent_Identity=29.5275590551181, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=32.6848249027237, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=30.2040816326531, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=28.9256198347107, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788849, Length=255, Percent_Identity=25.8823529411765, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1788381, Length=415, Percent_Identity=23.855421686747, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64280; Mature: 64280

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIAPTIFFLGIIFTLPSAQPFADKAFARQADLSLPMRRQVASFFPAGTLRTLQSTGPS
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCCC
TFNLHMAGNSTTASGTTGETAARPDADPADEAAGAADQDEPLLFHQNKPVIFLAVTILAA
EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCEEHHHHHHHHH
FGYQGLASHKKKKLSKLQNCDALTGLHNLHSFKNECIAHLRQKDGHSHAIVQFDISRFKL
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHE
INDKFGFTEGDSLLCVCGEALHSALADTEFCARSFADQFTAFLRYDDLHSLKERIYSIIN
ECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIEQWRAGSGMPTRIELRCGVYILDRHSHTLDDIQQAMDLAGYALQESKKRGKSKMVLYD
HHHHHHCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
ESMRKTSLLHQDLKDSITTALEREELKVWFQPKVNMLSNSVIGSEALARWYHPVHGLLLP
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
GKFMPLFEHSGDVLRVDFYIFEQVCKTIHQWERDGIMASTVSCNFSSQHFERPEFCRRLV
CCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCHHHHHHHH
EIASRHSVPHELLEVEITESTMLQNPDAANIQIKRLRDLGFRTTIDDFGSGYSSLGLLQL
HHHHHCCCCHHHHEEEECHHHHHCCCCCCCEEHHHHHHCCCCCCHHHHCCCHHHHHHHHH
FAADVIKFDRSFVKRNIAGKRAQIVLGSMIELTRQLGMSAICEGVETKEQASILMQHGCY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHCCCC
NAQGFYYARPMPADQFKKLLRVGRISPERAGSTA
CCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNRIAPTIFFLGIIFTLPSAQPFADKAFARQADLSLPMRRQVASFFPAGTLRTLQSTGPS
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCCC
TFNLHMAGNSTTASGTTGETAARPDADPADEAAGAADQDEPLLFHQNKPVIFLAVTILAA
EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCEEHHHHHHHHH
FGYQGLASHKKKKLSKLQNCDALTGLHNLHSFKNECIAHLRQKDGHSHAIVQFDISRFKL
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHE
INDKFGFTEGDSLLCVCGEALHSALADTEFCARSFADQFTAFLRYDDLHSLKERIYSIIN
ECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIEQWRAGSGMPTRIELRCGVYILDRHSHTLDDIQQAMDLAGYALQESKKRGKSKMVLYD
HHHHHHCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
ESMRKTSLLHQDLKDSITTALEREELKVWFQPKVNMLSNSVIGSEALARWYHPVHGLLLP
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
GKFMPLFEHSGDVLRVDFYIFEQVCKTIHQWERDGIMASTVSCNFSSQHFERPEFCRRLV
CCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCHHHHHHHH
EIASRHSVPHELLEVEITESTMLQNPDAANIQIKRLRDLGFRTTIDDFGSGYSSLGLLQL
HHHHHCCCCHHHHEEEECHHHHHCCCCCCCEEHHHHHHCCCCCCHHHHCCCHHHHHHHHH
FAADVIKFDRSFVKRNIAGKRAQIVLGSMIELTRQLGMSAICEGVETKEQASILMQHGCY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHCCCC
NAQGFYYARPMPADQFKKLLRVGRISPERAGSTA
CCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]