Click here to switch to the map view.

The map label for this gene is nirD [H]

Identifier: 220903567

GI number: 220903567

Start: 341466

End: 341987

Strand: Reverse

Name: nirD [H]

Synonym: Ddes_0286

Alternate gene names: 220903567

Gene position: 341987-341466 (Counterclockwise)

Preceding gene: 220903568

Following gene: 220903566

Centisome position: 11.9

GC content: 60.54

Gene sequence:

>522_bases
ATGACCACGCAAACATCTGCCGCCACCGGCAGCCCCACACAGCAAAATAACGCCGCCCTTGCCGACATGGACAGTATGGA
CAGGCAACTGCTGGACATCATCCAGACGGGCTTTCCCCTGTCGCCCCGCCCCTACGCCGAACTCGGCCAGCGCCTGGGCC
TGGACGAGCAGGAAGTGCTCGACAGGGTGCGCGGTCTCAAGGCCCGCAAGATCATCAGGCGACTCGGGGCCAACTTTCAG
TCCGCCAAGCTGGGCTTCGTGTCCACCCTGTGCGCGGCCAAGGTGCCCCAGGACAAAATGGACGCCTTTGTGGCCGAAGT
TAACGCCAAACCGGGCGTTACCCACAACTACCTGCGCGAGCACGACTACAATATCTGGTTTACCCTTATAAGCCCGTCGC
GGGAAGAAACGCAGGCCATTCTTGACGGCATCACCCAGGCAACGGGCGTGCCCATTCTGAATCTGCCCGCCACAAAGCTG
TTCAAGATCCGCGTGGATTTCCGCATGGACAATGACAGCTAG

Upstream 100 bases:

>100_bases
GCATGGACGGCGATCATATGGGCGAGGAACCGCTGTGCACCTATATTCCGGCCAAAATGCGCAAAAAGGGCCGGGACGGC
AAGTCCGGGGAGGAAAAATA

Downstream 100 bases:

>100_bases
GGTATTGTAACGCTGGCGGCATGCATTTCCGGCGCCGCACCACATTCATATTGCCGGCTGGCCACGCCACTACCCTGTGT
ATGCGCTGATGGCGGGGAAC

Product: putative AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTTQTSAATGSPTQQNNAALADMDSMDRQLLDIIQTGFPLSPRPYAELGQRLGLDEQEVLDRVRGLKARKIIRRLGANFQ
SAKLGFVSTLCAAKVPQDKMDAFVAEVNAKPGVTHNYLREHDYNIWFTLISPSREETQAILDGITQATGVPILNLPATKL
FKIRVDFRMDNDS

Sequences:

>Translated_173_residues
MTTQTSAATGSPTQQNNAALADMDSMDRQLLDIIQTGFPLSPRPYAELGQRLGLDEQEVLDRVRGLKARKIIRRLGANFQ
SAKLGFVSTLCAAKVPQDKMDAFVAEVNAKPGVTHNYLREHDYNIWFTLISPSREETQAILDGITQATGVPILNLPATKL
FKIRVDFRMDNDS
>Mature_172_residues
TTQTSAATGSPTQQNNAALADMDSMDRQLLDIIQTGFPLSPRPYAELGQRLGLDEQEVLDRVRGLKARKIIRRLGANFQS
AKLGFVSTLCAAKVPQDKMDAFVAEVNAKPGVTHNYLREHDYNIWFTLISPSREETQAILDGITQATGVPILNLPATKLF
KIRVDFRMDNDS

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19191; Mature: 19060

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQTSAATGSPTQQNNAALADMDSMDRQLLDIIQTGFPLSPRPYAELGQRLGLDEQEVL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHH
DRVRGLKARKIIRRLGANFQSAKLGFVSTLCAAKVPQDKMDAFVAEVNAKPGVTHNYLRE
HHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHH
HDYNIWFTLISPSREETQAILDGITQATGVPILNLPATKLFKIRVDFRMDNDS
CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEEECCCC
>Mature Secondary Structure 
TTQTSAATGSPTQQNNAALADMDSMDRQLLDIIQTGFPLSPRPYAELGQRLGLDEQEVL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHH
DRVRGLKARKIIRRLGANFQSAKLGFVSTLCAAKVPQDKMDAFVAEVNAKPGVTHNYLRE
HHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHH
HDYNIWFTLISPSREETQAILDGITQATGVPILNLPATKLFKIRVDFRMDNDS
CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7588711 [H]