| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is tpa [H]
Identifier: 220903499
GI number: 220903499
Start: 269497
End: 270855
Strand: Direct
Name: tpa [H]
Synonym: Ddes_0218
Alternate gene names: 220903499
Gene position: 269497-270855 (Clockwise)
Preceding gene: 220903498
Following gene: 220903501
Centisome position: 9.38
GC content: 54.6
Gene sequence:
>1359_bases ATGTCAGCAAAGAACACAAATGAATATGTCAACGGGGATATAAAAAACGTATGGCACCATCTGATGCTGCATCAGGGCAA TGCCCCCATGATTGCGGTAGAGGGCAAGGGCCTGTACCTCAAGGATCTTAACGGCAAGGAATATCTGGATGCCACCTCCG GCGGCGTCTGGTGCGTCAATGTGGGTTACGGCCGTGACCGTATCGCCAATGCCGCCGCCGAGCAGATGAAAAAACTGCCT TTTTATGCGGCCAGTTGCGGCTCCCAGCCTGCCATTGATTTTTCTGAAAAGCTGCTTTCGCACATGCCGGGGCTTTCCCG CGTGTATATTTCCAGCAGTGGCTCCGAGGCCAACGAAAAGGCCTTCAAGATGGTGCGCCAGATTTCCCAGCTCAAGCACG GCGGCAAAAAATATAAAATCATTTACCGTGACCGCGATTACCACGGCACCACCATCAGCACCCTGAGCGCTTGCGGCCAG GAAGAGCGCCGTGAGCAGTATGGTCCCTTTACCCCCGGTTTTGTGGAGTTTCCCGCTTGTCTGGCCTATCGTTCCCCCTA TCCTGAAGGCACGAAAAACCTGGGCGAAAAGTTTGCCCGCGAGCTGGAAGCCGTGGTTCTGAAGGAAGGTCCCGACACCG TGGGCGCTGTTATTCTGGAGCCGATCACGGCTGGCGGCGGCATCATTGTGCCTCCGGAAGGCTACTATGAGACCATCTCC GAGATATGCAAGAAATACGGCATCCTGATCATTATGGATGAAGTGGTCTGCGGTCTTGGCAGAACGGGCAAATGGTTCGG CTACCAGCACTTCAACATCCAGCCCGACATTGTGACCATGGCCAAGGGTGTTGCCAGCGCCTACATGCCCATTTCCTGCA CCGTGACCACCGAAGAAGTGTTTGCGGCCCTGCAGGATACCACCGACAAACTCTCGTATTTCCGCGATATCAGTACCTTC GGTGGCTGCCTTGCCGCCCCGGCTGCGGCTCTTGAAAACATCAAGATCATTGAAGAAGAAAGCCTGCTGGACAATGTTGT AGCCATGGGCGACTACCTGCAGCAGGGGCTTCAGGAGCTGCTTTCGCACAGCAATGTGGGCGATGTACGCGGCAAAGGTC TTTTGCAGGGCATTGAATTTGTTGCTGACAAGGCTTCGAAAAAGCCCCTTGAAGAAGAAAAGGTCATCGCCGTCTGCGGA GCCATGGCCAAGCGCGGCGTGCTTGTGGGCAGAACAAACCGCAGCTTTGTGGGCCGAAACAATATCGTCAATGTGGCTCC GGCCTATATTGTGACCAAGGATCAGATTGATATCATTCTCAAGGCGCTGCGCGAGTCCATAACCGAAGTTCTGGGCTAG
Upstream 100 bases:
>100_bases CGGCCCTTGCCGGATGCGCGGAATGTTTTGTTGAACTATGGGATTTTGATTTCAGAGCTGTTTATGGCCGCAGTCCAACA TTTTTAAGGAGTGAACTTCC
Downstream 100 bases:
>100_bases CAGCCGGCTTGCCGGGCTGATTCACATCGGCAGCCTGTCTGCCCTCCGGCAATAGTGAGCCTTGCCGGTCGGTACTGGGC AACCCGAAGAGGACGGCCGG
Product: class III aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MSAKNTNEYVNGDIKNVWHHLMLHQGNAPMIAVEGKGLYLKDLNGKEYLDATSGGVWCVNVGYGRDRIANAAAEQMKKLP FYAASCGSQPAIDFSEKLLSHMPGLSRVYISSSGSEANEKAFKMVRQISQLKHGGKKYKIIYRDRDYHGTTISTLSACGQ EERREQYGPFTPGFVEFPACLAYRSPYPEGTKNLGEKFARELEAVVLKEGPDTVGAVILEPITAGGGIIVPPEGYYETIS EICKKYGILIIMDEVVCGLGRTGKWFGYQHFNIQPDIVTMAKGVASAYMPISCTVTTEEVFAALQDTTDKLSYFRDISTF GGCLAAPAAALENIKIIEEESLLDNVVAMGDYLQQGLQELLSHSNVGDVRGKGLLQGIEFVADKASKKPLEEEKVIAVCG AMAKRGVLVGRTNRSFVGRNNIVNVAPAYIVTKDQIDIILKALRESITEVLG
Sequences:
>Translated_452_residues MSAKNTNEYVNGDIKNVWHHLMLHQGNAPMIAVEGKGLYLKDLNGKEYLDATSGGVWCVNVGYGRDRIANAAAEQMKKLP FYAASCGSQPAIDFSEKLLSHMPGLSRVYISSSGSEANEKAFKMVRQISQLKHGGKKYKIIYRDRDYHGTTISTLSACGQ EERREQYGPFTPGFVEFPACLAYRSPYPEGTKNLGEKFARELEAVVLKEGPDTVGAVILEPITAGGGIIVPPEGYYETIS EICKKYGILIIMDEVVCGLGRTGKWFGYQHFNIQPDIVTMAKGVASAYMPISCTVTTEEVFAALQDTTDKLSYFRDISTF GGCLAAPAAALENIKIIEEESLLDNVVAMGDYLQQGLQELLSHSNVGDVRGKGLLQGIEFVADKASKKPLEEEKVIAVCG AMAKRGVLVGRTNRSFVGRNNIVNVAPAYIVTKDQIDIILKALRESITEVLG >Mature_451_residues SAKNTNEYVNGDIKNVWHHLMLHQGNAPMIAVEGKGLYLKDLNGKEYLDATSGGVWCVNVGYGRDRIANAAAEQMKKLPF YAASCGSQPAIDFSEKLLSHMPGLSRVYISSSGSEANEKAFKMVRQISQLKHGGKKYKIIYRDRDYHGTTISTLSACGQE ERREQYGPFTPGFVEFPACLAYRSPYPEGTKNLGEKFARELEAVVLKEGPDTVGAVILEPITAGGGIIVPPEGYYETISE ICKKYGILIIMDEVVCGLGRTGKWFGYQHFNIQPDIVTMAKGVASAYMPISCTVTTEEVFAALQDTTDKLSYFRDISTFG GCLAAPAAALENIKIIEEESLLDNVVAMGDYLQQGLQELLSHSNVGDVRGKGLLQGIEFVADKASKKPLEEEKVIAVCGA MAKRGVLVGRTNRSFVGRNNIVNVAPAYIVTKDQIDIILKALRESITEVLG
Specific function: Catalyzes the degradation of taurine into alanine and sulfoacetaldehyde. Can also transaminate hypotaurine (2- aminosulfinate), beta-alanine and with low activity cysteine and 3-aminopropanesulfonate. In addition to pyruvate, 2-ketobutyrate and oxaloaceta
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI24119277, Length=440, Percent_Identity=30.2272727272727, Blast_Score=162, Evalue=6e-40, Organism=Homo sapiens, GI4557809, Length=421, Percent_Identity=27.5534441805226, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI37574042, Length=440, Percent_Identity=28.8636363636364, Blast_Score=156, Evalue=4e-38, Organism=Homo sapiens, GI13994255, Length=446, Percent_Identity=29.372197309417, Blast_Score=155, Evalue=6e-38, Organism=Homo sapiens, GI226442705, Length=440, Percent_Identity=29.0909090909091, Blast_Score=155, Evalue=8e-38, Organism=Homo sapiens, GI226442709, Length=408, Percent_Identity=28.6764705882353, Blast_Score=142, Evalue=5e-34, Organism=Homo sapiens, GI284507298, Length=338, Percent_Identity=27.810650887574, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI188536080, Length=399, Percent_Identity=25.5639097744361, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI38679950, Length=399, Percent_Identity=25.5639097744361, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI38679946, Length=399, Percent_Identity=25.5639097744361, Blast_Score=80, Evalue=3e-15, Organism=Escherichia coli, GI145693181, Length=413, Percent_Identity=31.7191283292978, Blast_Score=193, Evalue=2e-50, Organism=Escherichia coli, GI1789759, Length=428, Percent_Identity=28.9719626168224, Blast_Score=161, Evalue=8e-41, Organism=Escherichia coli, GI1788044, Length=411, Percent_Identity=27.9805352798054, Blast_Score=159, Evalue=4e-40, Organism=Escherichia coli, GI1789016, Length=370, Percent_Identity=28.6486486486486, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1787560, Length=416, Percent_Identity=26.4423076923077, Blast_Score=122, Evalue=6e-29, Organism=Escherichia coli, GI1786991, Length=453, Percent_Identity=27.3730684326711, Blast_Score=117, Evalue=1e-27, Organism=Caenorhabditis elegans, GI32564660, Length=446, Percent_Identity=30.2690582959641, Blast_Score=174, Evalue=1e-43, Organism=Caenorhabditis elegans, GI25144271, Length=423, Percent_Identity=27.4231678486998, Blast_Score=158, Evalue=7e-39, Organism=Caenorhabditis elegans, GI71992977, Length=442, Percent_Identity=25.5656108597285, Blast_Score=144, Evalue=8e-35, Organism=Caenorhabditis elegans, GI25144274, Length=310, Percent_Identity=29.3548387096774, Blast_Score=137, Evalue=9e-33, Organism=Caenorhabditis elegans, GI17541228, Length=443, Percent_Identity=23.0248306997743, Blast_Score=74, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323470, Length=454, Percent_Identity=27.3127753303965, Blast_Score=163, Evalue=4e-41, Organism=Saccharomyces cerevisiae, GI6324432, Length=350, Percent_Identity=28.2857142857143, Blast_Score=133, Evalue=6e-32, Organism=Saccharomyces cerevisiae, GI6324386, Length=479, Percent_Identity=24.8434237995825, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6321456, Length=448, Percent_Identity=24.1071428571429, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI28574759, Length=454, Percent_Identity=29.9559471365639, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI161085790, Length=448, Percent_Identity=29.6875, Blast_Score=165, Evalue=5e-41, Organism=Drosophila melanogaster, GI21357415, Length=423, Percent_Identity=28.1323877068558, Blast_Score=153, Evalue=2e-37, Organism=Drosophila melanogaster, GI21356575, Length=434, Percent_Identity=28.3410138248848, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI281366494, Length=449, Percent_Identity=24.9443207126949, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI24667139, Length=449, Percent_Identity=24.9443207126949, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI24667143, Length=449, Percent_Identity=24.9443207126949, Blast_Score=93, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.77 [H]
Molecular weight: Translated: 49360; Mature: 49229
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKNTNEYVNGDIKNVWHHLMLHQGNAPMIAVEGKGLYLKDLNGKEYLDATSGGVWCVN CCCCCCCHHCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCHHEECCCCCEEEEE VGYGRDRIANAAAEQMKKLPFYAASCGSQPAIDFSEKLLSHMPGLSRVYISSSGSEANEK ECCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHH AFKMVRQISQLKHGGKKYKIIYRDRDYHGTTISTLSACGQEERREQYGPFTPGFVEFPAC HHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHHH LAYRSPYPEGTKNLGEKFARELEAVVLKEGPDTVGAVILEPITAGGGIIVPPEGYYETIS HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEECCCCCEEECCCCHHHHHH EICKKYGILIIMDEVVCGLGRTGKWFGYQHFNIQPDIVTMAKGVASAYMPISCTVTTEEV HHHHHCCEEEEEHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEEHHHH FAALQDTTDKLSYFRDISTFGGCLAAPAAALENIKIIEEESLLDNVVAMGDYLQQGLQEL HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHH LSHSNVGDVRGKGLLQGIEFVADKASKKPLEEEKVIAVCGAMAKRGVLVGRTNRSFVGRN HHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCC NIVNVAPAYIVTKDQIDIILKALRESITEVLG CCEEECCEEEEEHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure SAKNTNEYVNGDIKNVWHHLMLHQGNAPMIAVEGKGLYLKDLNGKEYLDATSGGVWCVN CCCCCCHHCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCHHEECCCCCEEEEE VGYGRDRIANAAAEQMKKLPFYAASCGSQPAIDFSEKLLSHMPGLSRVYISSSGSEANEK ECCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHH AFKMVRQISQLKHGGKKYKIIYRDRDYHGTTISTLSACGQEERREQYGPFTPGFVEFPAC HHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHHH LAYRSPYPEGTKNLGEKFARELEAVVLKEGPDTVGAVILEPITAGGGIIVPPEGYYETIS HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEECCCCCEEECCCCHHHHHH EICKKYGILIIMDEVVCGLGRTGKWFGYQHFNIQPDIVTMAKGVASAYMPISCTVTTEEV HHHHHCCEEEEEHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEEHHHH FAALQDTTDKLSYFRDISTFGGCLAAPAAALENIKIIEEESLLDNVVAMGDYLQQGLQEL HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHH LSHSNVGDVRGKGLLQGIEFVADKASKKPLEEEKVIAVCGAMAKRGVLVGRTNRSFVGRN HHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCC NIVNVAPAYIVTKDQIDIILKALRESITEVLG CCEEECCEEEEEHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11082195 [H]