| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is yfbR [C]
Identifier: 220903472
GI number: 220903472
Start: 237768
End: 238373
Strand: Direct
Name: yfbR [C]
Synonym: Ddes_0188
Alternate gene names: 220903472
Gene position: 237768-238373 (Clockwise)
Preceding gene: 220903471
Following gene: 220903473
Centisome position: 8.27
GC content: 57.76
Gene sequence:
>606_bases ATGCCGGACGATACGCCGGATCAGAAAAGGCTGGAACGCCTGGCAGATTTTTTTAATGAAGTGGGAATGCTGCGCCATAC TCCGCGCACGGGATACGCCTTCCTCGGTTCCGGTAAAGAAAACGTGGCCGAGCATTCTTACCGGGTCAGCGTTATGGGCT ATGCATTGGCCCGCATGAGTGGCGTTGATCCGGCAAAAGTGACGTTCCTTTGCCTTTTTCACGATCTGCATGAGGCGCGC ACCGGCGACCTCAATTATGTGAATCACCGTTATGCGCAATGCCAGCCCCGCCGCGCTCTGGAAGACTGTGTTGCAGGCAC GGGCCTTGAGGACGACGTGCTGCCCCTCTGGGATGAGCTGGCAGAGAACACAAGCCCTGAAGCCATGCTGGCCCACGATG CTGACCAGCTTGACCTTATATGCAATCTTAAAGTGGAGCTGGACAAGGGCAACGCTTTTGCCGGGCAATGGCTTGAAAGT ACCGTCAAGCGGCTGCGCAGTCCCGCTGCCCGTGAACTGGCGGAAGTTGTGTTGCGCACGGACCATAACCGTTGGTGGTA CGGCCGGGTAGAGAAGGACTGGTGGATTCGCCGCGGCCGGGAATGA
Upstream 100 bases:
>100_bases AGCAGGCCCTGGGACAGCGTATTTGTGCCGCCTGGGCCGTCAACCCCATACCGGAAGCAGCATGAGCAATACACACGCTA AAAATATGAACAGCAAGGAT
Downstream 100 bases:
>100_bases TACTGATACGCGTTTCGACAACCCATAGAAATCACTTTACAAAATATTCAAATATACGCTAGTTTCGTTCTGTCCAGAAT TGTAGGAAAATGCCGTTGTG
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: Metal-Dependent Phosphohydrolase; HD Superfamily Hydrolase; Metal-Dependent Phosphohydrolase HD Region; Hydrolase; PIN Family xin-Antitoxin System Toxin Component; Hydrolase Of HAD Superfamily
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MPDDTPDQKRLERLADFFNEVGMLRHTPRTGYAFLGSGKENVAEHSYRVSVMGYALARMSGVDPAKVTFLCLFHDLHEAR TGDLNYVNHRYAQCQPRRALEDCVAGTGLEDDVLPLWDELAENTSPEAMLAHDADQLDLICNLKVELDKGNAFAGQWLES TVKRLRSPAARELAEVVLRTDHNRWWYGRVEKDWWIRRGRE
Sequences:
>Translated_201_residues MPDDTPDQKRLERLADFFNEVGMLRHTPRTGYAFLGSGKENVAEHSYRVSVMGYALARMSGVDPAKVTFLCLFHDLHEAR TGDLNYVNHRYAQCQPRRALEDCVAGTGLEDDVLPLWDELAENTSPEAMLAHDADQLDLICNLKVELDKGNAFAGQWLES TVKRLRSPAARELAEVVLRTDHNRWWYGRVEKDWWIRRGRE >Mature_200_residues PDDTPDQKRLERLADFFNEVGMLRHTPRTGYAFLGSGKENVAEHSYRVSVMGYALARMSGVDPAKVTFLCLFHDLHEART GDLNYVNHRYAQCQPRRALEDCVAGTGLEDDVLPLWDELAENTSPEAMLAHDADQLDLICNLKVELDKGNAFAGQWLEST VKRLRSPAARELAEVVLRTDHNRWWYGRVEKDWWIRRGRE
Specific function: Unknown
COG id: COG1896
COG function: function code R; Predicted hydrolases of HD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23072; Mature: 22941
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDDTPDQKRLERLADFFNEVGMLRHTPRTGYAFLGSGKENVAEHSYRVSVMGYALARMS CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHC GVDPAKVTFLCLFHDLHEARTGDLNYVNHRYAQCQPRRALEDCVAGTGLEDDVLPLWDEL CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHH AENTSPEAMLAHDADQLDLICNLKVELDKGNAFAGQWLESTVKRLRSPAARELAEVVLRT HCCCCCCEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHC DHNRWWYGRVEKDWWIRRGRE CCCCEEEECCCHHHHHHCCCC >Mature Secondary Structure PDDTPDQKRLERLADFFNEVGMLRHTPRTGYAFLGSGKENVAEHSYRVSVMGYALARMS CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHC GVDPAKVTFLCLFHDLHEARTGDLNYVNHRYAQCQPRRALEDCVAGTGLEDDVLPLWDEL CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHH AENTSPEAMLAHDADQLDLICNLKVELDKGNAFAGQWLESTVKRLRSPAARELAEVVLRT HCCCCCCEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHC DHNRWWYGRVEKDWWIRRGRE CCCCEEEECCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA