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The map label for this gene is ydcP [C]

Identifier: 220903310

GI number: 220903310

Start: 33825

End: 36089

Strand: Reverse

Name: ydcP [C]

Synonym: Ddes_0024

Alternate gene names: 220903310

Gene position: 36089-33825 (Counterclockwise)

Preceding gene: 220903311

Following gene: 220903309

Centisome position: 1.26

GC content: 63.4

Gene sequence:

>2265_bases
ATGAGTGATTCTTCAATTATTCCGGCGTCTGGCGCTGTTACTGTTCCCACTCCGGCCCGGCCGGAAATTCTGGCCCCTGC
AGGAGACACTCCGTCTTTTCTGGCAGCACTGGCTGCCGGGGCAGACGCCATCTATCTGGGCCTCAAGCATTTTTCGGCGC
GCATGCAGGCCGAAAACTTCGGCCTGACCGAACTTTCACGCCTGACCGACCTGGCCCATGCCGAAAATGCCCGCGTTTAT
GTGGCCATGAATACGCTTATCAAGCCGGACGAGCCTGCCGCCGCCTACCGCCTCACCAAGCGGCTGGCAACCCAGGTGCG
CCCGGACGGCCTTATCGTGCAGGATCTTGCCATACTCGATCTGGCGCGCCAGGCCGGTTTTGAGGGCGGCATTTTTCTTT
CCACCCTCGCCAACCTCACGCATCCCGACGCCCTTGTGGAAGCAAAAAAGCTTGGGGCCAGCCGCGTTATCCTGCCGCGT
GAGCTTTCCATTGACGAAATACGCCTCATGGGCGAAGCCTGCCCCGAAGGGCTTGACCTTGAGTGCTTTGTGCACGGTGC
TTTGTGCTATTGCGTTTCCGGCCGTTGCTACTGGTCCAGCTATATGGGCGGCAAAAGTGGCCTGCGCGGCCGTTGTGTGC
AGCCTTGCCGCCGCGTCTACCGCCAGGGCGGCCCCGCTGCGCTGGCCCTTGTCCGCAATGCGGAACGGGAAGAAATGGAC
CGCGCCCGGCAGGAACAGTCCCGCATGGATATCGCGCGCAAGGATCGCCGGGGTTCACGTGACACCCGCGACCGTGGCGA
CGGCCGCCGTGATGGACGACATGACCGCAATGAAGCCGCCGCCCTTGCCCATGGCCGGGGGCGCTCCGGCCGGCAGGGAA
GCATGCGCGGTCCCGGCCGCAAGGAACACAGCGGGCGCTGGTTTTCCTGCCTTGACCTTTCCCTTGACGTGCTTGCCAAA
ACACTGCTGGACATCCCCCACCTCGTTTCCTGGAAGATTGAAGGACGCAAGAAAGGGCCGCACTACGTTTATCATGTGGT
CACGGCCTATCGCATGCTGCGTGATAATCCCGGCGACCCCAAGGCCCGCAAGACCGCTGAAGAAATCCTTCAGATGGCCC
TGGGCCGTCCGGCCACCCGGGCACGTTTTTTGCCGCAGAAAGACAATACCGTGCCTACCACGCCCGACGGCCAGACCAGT
TCCGGCCTTCTGGCGGGCAAACTGCGCATCGAGCAGGACGGCAGCGTGGTGCTGAAACCCCACCTGGAACTGCTGCCGCA
GGACTACCTGCGCGTGGGCGTGGAAGACGAGCGCTGGCATGCCACCCTGCCCGTGACAAGGCGTATTCCCAAAGGCGGCA
GCCTCATCATGCGCCTGCCCAAGCACAAAACGCCCAAAGCGGGCACGTCCGTTTTTCTTATTGACCGGCGCGAGCCGGAG
CTTATGCGCATTCTCAAAAGCTGGCAGGCACGCCTTGACCAGTTTCCCGGCCGCCAGAGCAAGGCCGTGGAATCCAGCCC
GCGTATGCCTGCACCCGTCAGGCCGAGACCCCGCCCGGACATGTACGTCCGCTCCAGCATTCCGCAGGGCAAAGACATGC
GCGGCGGTAAAAACCAGTTGCAGGCCCTCTGGCTTTCGCCCCGCAGCGCCGACATCTCGCGCACGGTGGTGCAGCGCATC
TGCTGGTGGCTGCCGCCCGTGGTCTGGCCCGGCGAAGAAGAAACCCTGCGCCGCAGCGTTGCGCGCCTCTGGCGTGACGG
TGCGCGTCACTTTGTCTGTAACGAGCCGTGGCAGCGCGGCCTGTTCCCCGACAGTCTGGACGAAAACGCCGATCTGCTGG
TGGGGCCGTTCTGCAACGCGGCCAATGCCCCTGCCCTGGGCATACTGGCAGGCATGGGCTTTACAGGAGCGTTTGTAAGC
CCGGAACTGCCGCGTGAAGAAATGCTGGCCCTGCCCCGCCAAAGCCCCCTGCCCCTTGGCGCGGTGCTTTCCGGCTTCTG
GCCTGTGGGACTGAGCCGTTTCGGCCTGCTTGGCGTCAAGACCAACGAGCCGTTCCTGAGTCCCAAGGGCGAGCCTTTCT
GGGCGCGGCAGTACGGCGGCAATATCTGGATATATCCCGGCTGGCCTCTTGACCTCACCGCCAAAAGGCAGGAAATGGCC
GCCGCGGGCTACGGATTTTTTGCGCACATGCAGGAAAACCCGCCAGCCAGCCTGCCCGACATGCGGCGCGAAAGCCTGTT
CAACTGGGACGGCTCATTGCTGTAA

Upstream 100 bases:

>100_bases
ACATCAACGACCTCACCGCCCTTACGGGTTTTGCCCCGTCGACGCCCTTGCGCGAGGGCATCGCCCGCTTTGTGGAATGG
TATAAAGAGTATTATAAAAT

Downstream 100 bases:

>100_bases
GCAATATGGAATATGCCCGGGCGGCAGCAAAGGCCGCTGCCCGGCGCGCAACACAAGGTACGTCCGCAACACGGCGGCAC
ACAGTGACGATGACGCAATA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 753

Protein sequence:

>754_residues
MSDSSIIPASGAVTVPTPARPEILAPAGDTPSFLAALAAGADAIYLGLKHFSARMQAENFGLTELSRLTDLAHAENARVY
VAMNTLIKPDEPAAAYRLTKRLATQVRPDGLIVQDLAILDLARQAGFEGGIFLSTLANLTHPDALVEAKKLGASRVILPR
ELSIDEIRLMGEACPEGLDLECFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYRQGGPAALALVRNAEREEMD
RARQEQSRMDIARKDRRGSRDTRDRGDGRRDGRHDRNEAAALAHGRGRSGRQGSMRGPGRKEHSGRWFSCLDLSLDVLAK
TLLDIPHLVSWKIEGRKKGPHYVYHVVTAYRMLRDNPGDPKARKTAEEILQMALGRPATRARFLPQKDNTVPTTPDGQTS
SGLLAGKLRIEQDGSVVLKPHLELLPQDYLRVGVEDERWHATLPVTRRIPKGGSLIMRLPKHKTPKAGTSVFLIDRREPE
LMRILKSWQARLDQFPGRQSKAVESSPRMPAPVRPRPRPDMYVRSSIPQGKDMRGGKNQLQALWLSPRSADISRTVVQRI
CWWLPPVVWPGEEETLRRSVARLWRDGARHFVCNEPWQRGLFPDSLDENADLLVGPFCNAANAPALGILAGMGFTGAFVS
PELPREEMLALPRQSPLPLGAVLSGFWPVGLSRFGLLGVKTNEPFLSPKGEPFWARQYGGNIWIYPGWPLDLTAKRQEMA
AAGYGFFAHMQENPPASLPDMRRESLFNWDGSLL

Sequences:

>Translated_754_residues
MSDSSIIPASGAVTVPTPARPEILAPAGDTPSFLAALAAGADAIYLGLKHFSARMQAENFGLTELSRLTDLAHAENARVY
VAMNTLIKPDEPAAAYRLTKRLATQVRPDGLIVQDLAILDLARQAGFEGGIFLSTLANLTHPDALVEAKKLGASRVILPR
ELSIDEIRLMGEACPEGLDLECFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYRQGGPAALALVRNAEREEMD
RARQEQSRMDIARKDRRGSRDTRDRGDGRRDGRHDRNEAAALAHGRGRSGRQGSMRGPGRKEHSGRWFSCLDLSLDVLAK
TLLDIPHLVSWKIEGRKKGPHYVYHVVTAYRMLRDNPGDPKARKTAEEILQMALGRPATRARFLPQKDNTVPTTPDGQTS
SGLLAGKLRIEQDGSVVLKPHLELLPQDYLRVGVEDERWHATLPVTRRIPKGGSLIMRLPKHKTPKAGTSVFLIDRREPE
LMRILKSWQARLDQFPGRQSKAVESSPRMPAPVRPRPRPDMYVRSSIPQGKDMRGGKNQLQALWLSPRSADISRTVVQRI
CWWLPPVVWPGEEETLRRSVARLWRDGARHFVCNEPWQRGLFPDSLDENADLLVGPFCNAANAPALGILAGMGFTGAFVS
PELPREEMLALPRQSPLPLGAVLSGFWPVGLSRFGLLGVKTNEPFLSPKGEPFWARQYGGNIWIYPGWPLDLTAKRQEMA
AAGYGFFAHMQENPPASLPDMRRESLFNWDGSLL
>Mature_753_residues
SDSSIIPASGAVTVPTPARPEILAPAGDTPSFLAALAAGADAIYLGLKHFSARMQAENFGLTELSRLTDLAHAENARVYV
AMNTLIKPDEPAAAYRLTKRLATQVRPDGLIVQDLAILDLARQAGFEGGIFLSTLANLTHPDALVEAKKLGASRVILPRE
LSIDEIRLMGEACPEGLDLECFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYRQGGPAALALVRNAEREEMDR
ARQEQSRMDIARKDRRGSRDTRDRGDGRRDGRHDRNEAAALAHGRGRSGRQGSMRGPGRKEHSGRWFSCLDLSLDVLAKT
LLDIPHLVSWKIEGRKKGPHYVYHVVTAYRMLRDNPGDPKARKTAEEILQMALGRPATRARFLPQKDNTVPTTPDGQTSS
GLLAGKLRIEQDGSVVLKPHLELLPQDYLRVGVEDERWHATLPVTRRIPKGGSLIMRLPKHKTPKAGTSVFLIDRREPEL
MRILKSWQARLDQFPGRQSKAVESSPRMPAPVRPRPRPDMYVRSSIPQGKDMRGGKNQLQALWLSPRSADISRTVVQRIC
WWLPPVVWPGEEETLRRSVARLWRDGARHFVCNEPWQRGLFPDSLDENADLLVGPFCNAANAPALGILAGMGFTGAFVSP
ELPREEMLALPRQSPLPLGAVLSGFWPVGLSRFGLLGVKTNEPFLSPKGEPFWARQYGGNIWIYPGWPLDLTAKRQEMAA
AGYGFFAHMQENPPASLPDMRRESLFNWDGSLL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=201, Percent_Identity=36.81592039801, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI1789548, Length=349, Percent_Identity=29.2263610315186, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788397, Length=203, Percent_Identity=34.4827586206897, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 83656; Mature: 83525

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSSIIPASGAVTVPTPARPEILAPAGDTPSFLAALAAGADAIYLGLKHFSARMQAENF
CCCCCCCCCCCCEECCCCCCCCEECCCCCCHHHHHHHHCCCHHEEHHHHHHHHHHHHCCC
GLTELSRLTDLAHAENARVYVAMNTLIKPDEPAAAYRLTKRLATQVRPDGLIVQDLAILD
CHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHH
LARQAGFEGGIFLSTLANLTHPDALVEAKKLGASRVILPRELSIDEIRLMGEACPEGLDL
HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
ECFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYRQGGPAALALVRNAEREEMD
EHHHHHEEHHHCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEHHHHCCCHHHHH
RARQEQSRMDIARKDRRGSRDTRDRGDGRRDGRHDRNEAAALAHGRGRSGRQGSMRGPGR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
KEHSGRWFSCLDLSLDVLAKTLLDIPHLVSWKIEGRKKGPHYVYHVVTAYRMLRDNPGDP
CCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
KARKTAEEILQMALGRPATRARFLPQKDNTVPTTPDGQTSSGLLAGKLRIEQDGSVVLKP
HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEECC
HLELLPQDYLRVGVEDERWHATLPVTRRIPKGGSLIMRLPKHKTPKAGTSVFLIDRREPE
CHHHCCHHHHHCCCCCCCEEEECCHHHCCCCCCCEEEECCCCCCCCCCCEEEEEECCCHH
LMRILKSWQARLDQFPGRQSKAVESSPRMPAPVRPRPRPDMYVRSSIPQGKDMRGGKNQL
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHE
QALWLSPRSADISRTVVQRICWWLPPVVWPGEEETLRRSVARLWRDGARHFVCNEPWQRG
EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHCC
LFPDSLDENADLLVGPFCNAANAPALGILAGMGFTGAFVSPELPREEMLALPRQSPLPLG
CCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHH
AVLSGFWPVGLSRFGLLGVKTNEPFLSPKGEPFWARQYGGNIWIYPGWPLDLTAKRQEMA
HHHHCHHHHHHHHHCEEEEECCCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCHHHHHHH
AAGYGFFAHMQENPPASLPDMRRESLFNWDGSLL
HHCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDSSIIPASGAVTVPTPARPEILAPAGDTPSFLAALAAGADAIYLGLKHFSARMQAENF
CCCCCCCCCCCEECCCCCCCCEECCCCCCHHHHHHHHCCCHHEEHHHHHHHHHHHHCCC
GLTELSRLTDLAHAENARVYVAMNTLIKPDEPAAAYRLTKRLATQVRPDGLIVQDLAILD
CHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHH
LARQAGFEGGIFLSTLANLTHPDALVEAKKLGASRVILPRELSIDEIRLMGEACPEGLDL
HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
ECFVHGALCYCVSGRCYWSSYMGGKSGLRGRCVQPCRRVYRQGGPAALALVRNAEREEMD
EHHHHHEEHHHCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEHHHHCCCHHHHH
RARQEQSRMDIARKDRRGSRDTRDRGDGRRDGRHDRNEAAALAHGRGRSGRQGSMRGPGR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
KEHSGRWFSCLDLSLDVLAKTLLDIPHLVSWKIEGRKKGPHYVYHVVTAYRMLRDNPGDP
CCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
KARKTAEEILQMALGRPATRARFLPQKDNTVPTTPDGQTSSGLLAGKLRIEQDGSVVLKP
HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEECC
HLELLPQDYLRVGVEDERWHATLPVTRRIPKGGSLIMRLPKHKTPKAGTSVFLIDRREPE
CHHHCCHHHHHCCCCCCCEEEECCHHHCCCCCCCEEEECCCCCCCCCCCEEEEEECCCHH
LMRILKSWQARLDQFPGRQSKAVESSPRMPAPVRPRPRPDMYVRSSIPQGKDMRGGKNQL
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHE
QALWLSPRSADISRTVVQRICWWLPPVVWPGEEETLRRSVARLWRDGARHFVCNEPWQRG
EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHCC
LFPDSLDENADLLVGPFCNAANAPALGILAGMGFTGAFVSPELPREEMLALPRQSPLPLG
CCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHH
AVLSGFWPVGLSRFGLLGVKTNEPFLSPKGEPFWARQYGGNIWIYPGWPLDLTAKRQEMA
HHHHCHHHHHHHHHCEEEEECCCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCHHHHHHH
AAGYGFFAHMQENPPASLPDMRRESLFNWDGSLL
HHCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]