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The map label for this gene is aubA [H]

Identifier: 218883766

GI number: 218883766

Start: 424305

End: 425729

Strand: Reverse

Name: aubA [H]

Synonym: DKAM_0455

Alternate gene names: 218883766

Gene position: 425729-424305 (Counterclockwise)

Preceding gene: 218883767

Following gene: 218883764

Centisome position: 31.18

GC content: 48.28

Gene sequence:

>1425_bases
GTGGTGGCAGCCTTGGCCAAGGTGAGGATCAGGGGTATATATGCTACAGCGTTAACTAAGCTGTTAATGGATAAGGGGCA
TTCAATAGTGCAGCCAAGCGAGAAGATAGCGTCTAGGTTCAACATAGGCATCGATAATTCCCCGAGTGATGTCACGGTTA
AGGACAAGGATGATGGTGATGGAGTAGTTGTGATAGGGTTTCCCAGCGAGGCTAGAGAGATATACAACGACATAGTCTCA
GCCATTCCATACACCTTTAGATCGATCTCACAGGTAGAGCTTCACTCAATATACCTTGCTAGAGTAGAGAAGAACACGGG
AGATACCTGTATAGTTGACACCGGGGACTTCAAGACCGAGCTAACTCCCTGCAGGGAGAAGCCGGGTGATAAGGTTATAG
TGGGTGTTGCGAAGACGGCTTTATACCCTGGGGAGAAGATAAGCGTGACGAGGAGCTTTAGGCTACTGGGTAAACTAGTA
GCATTAATCCACGGGATGCAGAAGGTAACTTTCTCCGAGCACATCAGGGATCCAGGTTTAAAAGCCAGGTTAACTGCTCT
AGCAGTGTCACGTTTAATGGGTGGTAATCTAGGGGTCCATTTCAGAAGTAGCGCGAGGTTCGCTGAGCCAAGTGAAATAC
TCGGTGAGATAGAGTTCTTGCTAAACGAGTACAAGAGGGTAATGAGTAAGGCTAGTGAGGCAGATGCCCCTCTAAAGCTT
TACAGGGGTGAGCTAGTAGGTGTCATAGGCTTCACCAGTCTCTCGAAGAATATATTGGATGATATAAGGGGTACCGTGAC
CCCAACTATTAGGGGACATCACTCACTACGCTCCATGGGTTTAGGCGACATAGTGGAGGCCATGGAGCACTGTATTGTAA
ATGGATGCAGCGGGGATTCAGTCTCAAGATGTATATGGGAATACGTGTTAGTCAGGCTGGCTGAAAGCGGGGTAATACAT
ATAAGGCATGTTAAGCCAACTGGTGAAGCATTGGATTTAACACCAGGCAGGATCCACAGGATTGAAAGGAGTGTGGAAGG
GGTAAGGGTGATTATTAAACGTATTATATCGGGTAGCGGCTTATACGATGGAATAGGCGTTGAGAGAAAACCTGGCGACC
TCGACTACATGGTTGTCGAGCCCGGGAAACCCTATATAGTCCACAACTACTACAGGGATACCACATGGCTTGGCTCATAT
ATAAACGTGAACACACCCCCCGAGCTCTCGGTCAACATAGTGAAGTACCATGACCTCCTCGTAGATGTTGCAGTAGCGCC
AGGCAGGGAGCCCATCGTGCTCGACAGGGATGAATTAGAGAAAACATTTTCAGCAGGGTTGATTGATCCCCAACTCTACG
AGTACGCGTTGAAGACGCTTGAGGAGATCGCCAGGGATCCAGCTCGGTACCTTTATAATCCGTGA

Upstream 100 bases:

>100_bases
AATAAATCCCGTGCACTGGCTCCCCCATCAGTCATGTTATGTTTATCAGGGATCCATGTAGTACTGTCTCTCCCCGTGTT
TAATCCGGTTTGTTGAACCA

Downstream 100 bases:

>100_bases
CTCCTTTCAGTAAAATAATGGTGCGGGGGTGCCCGAGCTTGGTCAAAGGGGTCGGGCTCAGGACCCGATGGCGTAGGCCT
GCGTGGGTTCAAATCCCACC

Product: RNA-loop binding protein FAU-1

Products: NA

Alternate protein names: AU-binding protein [H]

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MVAALAKVRIRGIYATALTKLLMDKGHSIVQPSEKIASRFNIGIDNSPSDVTVKDKDDGDGVVVIGFPSEAREIYNDIVS
AIPYTFRSISQVELHSIYLARVEKNTGDTCIVDTGDFKTELTPCREKPGDKVIVGVAKTALYPGEKISVTRSFRLLGKLV
ALIHGMQKVTFSEHIRDPGLKARLTALAVSRLMGGNLGVHFRSSARFAEPSEILGEIEFLLNEYKRVMSKASEADAPLKL
YRGELVGVIGFTSLSKNILDDIRGTVTPTIRGHHSLRSMGLGDIVEAMEHCIVNGCSGDSVSRCIWEYVLVRLAESGVIH
IRHVKPTGEALDLTPGRIHRIERSVEGVRVIIKRIISGSGLYDGIGVERKPGDLDYMVVEPGKPYIVHNYYRDTTWLGSY
INVNTPPELSVNIVKYHDLLVDVAVAPGREPIVLDRDELEKTFSAGLIDPQLYEYALKTLEEIARDPARYLYNP

Sequences:

>Translated_474_residues
MVAALAKVRIRGIYATALTKLLMDKGHSIVQPSEKIASRFNIGIDNSPSDVTVKDKDDGDGVVVIGFPSEAREIYNDIVS
AIPYTFRSISQVELHSIYLARVEKNTGDTCIVDTGDFKTELTPCREKPGDKVIVGVAKTALYPGEKISVTRSFRLLGKLV
ALIHGMQKVTFSEHIRDPGLKARLTALAVSRLMGGNLGVHFRSSARFAEPSEILGEIEFLLNEYKRVMSKASEADAPLKL
YRGELVGVIGFTSLSKNILDDIRGTVTPTIRGHHSLRSMGLGDIVEAMEHCIVNGCSGDSVSRCIWEYVLVRLAESGVIH
IRHVKPTGEALDLTPGRIHRIERSVEGVRVIIKRIISGSGLYDGIGVERKPGDLDYMVVEPGKPYIVHNYYRDTTWLGSY
INVNTPPELSVNIVKYHDLLVDVAVAPGREPIVLDRDELEKTFSAGLIDPQLYEYALKTLEEIARDPARYLYNP
>Mature_474_residues
MVAALAKVRIRGIYATALTKLLMDKGHSIVQPSEKIASRFNIGIDNSPSDVTVKDKDDGDGVVVIGFPSEAREIYNDIVS
AIPYTFRSISQVELHSIYLARVEKNTGDTCIVDTGDFKTELTPCREKPGDKVIVGVAKTALYPGEKISVTRSFRLLGKLV
ALIHGMQKVTFSEHIRDPGLKARLTALAVSRLMGGNLGVHFRSSARFAEPSEILGEIEFLLNEYKRVMSKASEADAPLKL
YRGELVGVIGFTSLSKNILDDIRGTVTPTIRGHHSLRSMGLGDIVEAMEHCIVNGCSGDSVSRCIWEYVLVRLAESGVIH
IRHVKPTGEALDLTPGRIHRIERSVEGVRVIIKRIISGSGLYDGIGVERKPGDLDYMVVEPGKPYIVHNYYRDTTWLGSY
INVNTPPELSVNIVKYHDLLVDVAVAPGREPIVLDRDELEKTFSAGLIDPQLYEYALKTLEEIARDPARYLYNP

Specific function: Binds to RNA in loop regions with AU-rich sequences [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007295
- InterPro:   IPR019307 [H]

Pfam domain/function: PF04167 DUF402; PF10150 RNase_E_G [H]

EC number: NA

Molecular weight: Translated: 52367; Mature: 52367

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAALAKVRIRGIYATALTKLLMDKGHSIVQPSEKIASRFNIGIDNSPSDVTVKDKDDGD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCC
GVVVIGFPSEAREIYNDIVSAIPYTFRSISQVELHSIYLARVEKNTGDTCIVDTGDFKTE
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCC
LTPCREKPGDKVIVGVAKTALYPGEKISVTRSFRLLGKLVALIHGMQKVTFSEHIRDPGL
CCCHHCCCCCEEEEEEHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KARLTALAVSRLMGGNLGVHFRSSARFAEPSEILGEIEFLLNEYKRVMSKASEADAPLKL
HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
YRGELVGVIGFTSLSKNILDDIRGTVTPTIRGHHSLRSMGLGDIVEAMEHCIVNGCSGDS
HCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCH
VSRCIWEYVLVRLAESGVIHIRHVKPTGEALDLTPGRIHRIERSVEGVRVIIKRIISGSG
HHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LYDGIGVERKPGDLDYMVVEPGKPYIVHNYYRDTTWLGSYINVNTPPELSVNIVKYHDLL
CCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCHHCCCEEECCCCCCCEEEEEEEHHHH
VDVAVAPGREPIVLDRDELEKTFSAGLIDPQLYEYALKTLEEIARDPARYLYNP
EEEEECCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MVAALAKVRIRGIYATALTKLLMDKGHSIVQPSEKIASRFNIGIDNSPSDVTVKDKDDGD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCC
GVVVIGFPSEAREIYNDIVSAIPYTFRSISQVELHSIYLARVEKNTGDTCIVDTGDFKTE
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCC
LTPCREKPGDKVIVGVAKTALYPGEKISVTRSFRLLGKLVALIHGMQKVTFSEHIRDPGL
CCCHHCCCCCEEEEEEHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KARLTALAVSRLMGGNLGVHFRSSARFAEPSEILGEIEFLLNEYKRVMSKASEADAPLKL
HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
YRGELVGVIGFTSLSKNILDDIRGTVTPTIRGHHSLRSMGLGDIVEAMEHCIVNGCSGDS
HCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCH
VSRCIWEYVLVRLAESGVIHIRHVKPTGEALDLTPGRIHRIERSVEGVRVIIKRIISGSG
HHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LYDGIGVERKPGDLDYMVVEPGKPYIVHNYYRDTTWLGSYINVNTPPELSVNIVKYHDLL
CCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCHHCCCEEECCCCCCCEEEEEEEHHHH
VDVAVAPGREPIVLDRDELEKTFSAGLIDPQLYEYALKTLEEIARDPARYLYNP
EEEEECCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA