Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 218883759

GI number: 218883759

Start: 418588

End: 419376

Strand: Reverse

Name: ybbK [C]

Synonym: DKAM_0448

Alternate gene names: 218883759

Gene position: 419376-418588 (Counterclockwise)

Preceding gene: 218883761

Following gene: 218883758

Centisome position: 30.72

GC content: 47.53

Gene sequence:

>789_bases
ATGGAATTATTTACCTTAATACTCTTACTAGTCATAATACTATTCATCGGTGTGCCGCTTCTCTCATCGGCAATAAGGAT
AATAAGGGAGTATGAGAGGGCAGTCGTCTTCAGGCTTGGCAGACTAGTGGGTGCCAAGGGGCCGGGGATAGTATTTATCA
TACCCTTCATCGACCAGCTTCTAAAAGTAGACTTGAGAATCATAACAGTTGATGTACCTAAGCAGGAGATAATAACCAAG
GATAATGTCAGCGTGAAGGTTGATGCTGTAATATACTATAGGGCCATAGACCCTGTGGCAGCGGTTACAAAGGTAGCTAA
CTACCATTACTCAGTGAGCCTGCTGGGACAAACCGTTCTAAGGGATGTACTAGGGCAATCGGAGCTGGACGAACTACTCC
AGAAAAGAGATGAGTTAAACAAGAAGATATCCAGTATACTGGATGAGCTGACGATGCCCTGGGGTATAAAGATCACGGCT
GTGACGTTGAAGTCTGTTGAACTACCAGAGGAGTTAATGAGGGCTATGGCTAAGCAGGCCGAGGCAGAGAGATGGAGGAG
GGCAAGGGTCATAGAGGCGGAGGGTGAGAGGCAGGCATCCCAGATACTAGGTGAGGCAGCGAAGATGTATGAGGAGCACC
CGGTAGCTTTAAGGCTGAGGGAGCTGCAGACCCTAATAGAGATAGCTAGGGAGAAGGCCCTTGTCGTTGTAACCGAGTCC
TCGGCTTCACCAACGGGCTCTATGATTGGAGTATATAAGGCTCTAAAAGAGAAGGAAAAAACTAGCTAG

Upstream 100 bases:

>100_bases
ATAATTCATCAAAACCAGTAGGCTGTGAAGACCATCTATATAGACACAATGTAGGTTTATTAAGAAGTTGAATACTAACT
ATTACTATAGAGGTGTAATA

Downstream 100 bases:

>100_bases
GATAGGTGTACTTGGGTTGGTTAGAAACCCATTGCTATTTTTTGCACTAGTCATCGTAGTGGCACTACTCATTCAAGTCA
TCTCCATCAGTGGTGATAAT

Product: stomatin/prohibitin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MELFTLILLLVIILFIGVPLLSSAIRIIREYERAVVFRLGRLVGAKGPGIVFIIPFIDQLLKVDLRIITVDVPKQEIITK
DNVSVKVDAVIYYRAIDPVAAVTKVANYHYSVSLLGQTVLRDVLGQSELDELLQKRDELNKKISSILDELTMPWGIKITA
VTLKSVELPEELMRAMAKQAEAERWRRARVIEAEGERQASQILGEAAKMYEEHPVALRLRELQTLIEIAREKALVVVTES
SASPTGSMIGVYKALKEKEKTS

Sequences:

>Translated_262_residues
MELFTLILLLVIILFIGVPLLSSAIRIIREYERAVVFRLGRLVGAKGPGIVFIIPFIDQLLKVDLRIITVDVPKQEIITK
DNVSVKVDAVIYYRAIDPVAAVTKVANYHYSVSLLGQTVLRDVLGQSELDELLQKRDELNKKISSILDELTMPWGIKITA
VTLKSVELPEELMRAMAKQAEAERWRRARVIEAEGERQASQILGEAAKMYEEHPVALRLRELQTLIEIAREKALVVVTES
SASPTGSMIGVYKALKEKEKTS
>Mature_262_residues
MELFTLILLLVIILFIGVPLLSSAIRIIREYERAVVFRLGRLVGAKGPGIVFIIPFIDQLLKVDLRIITVDVPKQEIITK
DNVSVKVDAVIYYRAIDPVAAVTKVANYHYSVSLLGQTVLRDVLGQSELDELLQKRDELNKKISSILDELTMPWGIKITA
VTLKSVELPEELMRAMAKQAEAERWRRARVIEAEGERQASQILGEAAKMYEEHPVALRLRELQTLIEIAREKALVVVTES
SASPTGSMIGVYKALKEKEKTS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=238, Percent_Identity=47.4789915966387, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI21686995, Length=238, Percent_Identity=47.4789915966387, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI38016911, Length=237, Percent_Identity=48.1012658227848, Blast_Score=195, Evalue=3e-50,
Organism=Homo sapiens, GI7657615, Length=236, Percent_Identity=37.2881355932203, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI7305503, Length=196, Percent_Identity=33.1632653061224, Blast_Score=117, Evalue=8e-27,
Organism=Homo sapiens, GI20149563, Length=140, Percent_Identity=31.4285714285714, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1786697, Length=204, Percent_Identity=36.2745098039216, Blast_Score=150, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI71987612, Length=235, Percent_Identity=48.5106382978723, Blast_Score=201, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=235, Percent_Identity=48.5106382978723, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=235, Percent_Identity=48.5106382978723, Blast_Score=199, Evalue=9e-52,
Organism=Caenorhabditis elegans, GI17569493, Length=238, Percent_Identity=46.218487394958, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17570161, Length=237, Percent_Identity=47.2573839662447, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI193210507, Length=237, Percent_Identity=47.2573839662447, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI193209764, Length=238, Percent_Identity=46.218487394958, Blast_Score=197, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI32566490, Length=211, Percent_Identity=52.60663507109, Blast_Score=197, Evalue=6e-51,
Organism=Caenorhabditis elegans, GI17569497, Length=237, Percent_Identity=43.0379746835443, Blast_Score=194, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17569499, Length=233, Percent_Identity=47.2103004291845, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=216, Percent_Identity=45.8333333333333, Blast_Score=187, Evalue=5e-48,
Organism=Caenorhabditis elegans, GI17570459, Length=239, Percent_Identity=43.9330543933054, Blast_Score=181, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=48.8888888888889, Blast_Score=170, Evalue=8e-43,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=50, Blast_Score=134, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI32564147, Length=183, Percent_Identity=33.879781420765, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17542664, Length=191, Percent_Identity=30.3664921465969, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI45556022, Length=237, Percent_Identity=46.8354430379747, Blast_Score=199, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24657857, Length=235, Percent_Identity=48.936170212766, Blast_Score=196, Evalue=1e-50,
Organism=Drosophila melanogaster, GI281365664, Length=235, Percent_Identity=48.936170212766, Blast_Score=196, Evalue=1e-50,
Organism=Drosophila melanogaster, GI62484448, Length=235, Percent_Identity=48.936170212766, Blast_Score=195, Evalue=2e-50,
Organism=Drosophila melanogaster, GI62484274, Length=235, Percent_Identity=48.936170212766, Blast_Score=194, Evalue=4e-50,
Organism=Drosophila melanogaster, GI18860517, Length=236, Percent_Identity=46.6101694915254, Blast_Score=193, Evalue=9e-50,
Organism=Drosophila melanogaster, GI28573263, Length=230, Percent_Identity=40.4347826086956, Blast_Score=174, Evalue=4e-44,
Organism=Drosophila melanogaster, GI21356845, Length=233, Percent_Identity=37.7682403433476, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI281361631, Length=234, Percent_Identity=37.1794871794872, Blast_Score=164, Evalue=8e-41,
Organism=Drosophila melanogaster, GI281361633, Length=234, Percent_Identity=37.1794871794872, Blast_Score=163, Evalue=8e-41,
Organism=Drosophila melanogaster, GI45550506, Length=177, Percent_Identity=35.0282485875706, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI281361635, Length=173, Percent_Identity=34.6820809248555, Blast_Score=114, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29389; Mature: 29389

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFTLILLLVIILFIGVPLLSSAIRIIREYERAVVFRLGRLVGAKGPGIVFIIPFIDQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHH
LKVDLRIITVDVPKQEIITKDNVSVKVDAVIYYRAIDPVAAVTKVANYHYSVSLLGQTVL
HHCCEEEEEEECCHHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RDVLGQSELDELLQKRDELNKKISSILDELTMPWGIKITAVTLKSVELPEELMRAMAKQA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCHHHHHHHHHHHH
EAERWRRARVIEAEGERQASQILGEAAKMYEEHPVALRLRELQTLIEIAREKALVVVTES
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECC
SASPTGSMIGVYKALKEKEKTS
CCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELFTLILLLVIILFIGVPLLSSAIRIIREYERAVVFRLGRLVGAKGPGIVFIIPFIDQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHH
LKVDLRIITVDVPKQEIITKDNVSVKVDAVIYYRAIDPVAAVTKVANYHYSVSLLGQTVL
HHCCEEEEEEECCHHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RDVLGQSELDELLQKRDELNKKISSILDELTMPWGIKITAVTLKSVELPEELMRAMAKQA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCHHHHHHHHHHHH
EAERWRRARVIEAEGERQASQILGEAAKMYEEHPVALRLRELQTLIEIAREKALVVVTES
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECC
SASPTGSMIGVYKALKEKEKTS
CCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]