Definition Desulfurococcus kamchatkensis 1221n chromosome, complete genome.
Accession NC_011766
Length 1,365,223

Click here to switch to the map view.

The map label for this gene is 218883404

Identifier: 218883404

GI number: 218883404

Start: 80358

End: 81677

Strand: Reverse

Name: 218883404

Synonym: DKAM_0090

Alternate gene names: NA

Gene position: 81677-80358 (Counterclockwise)

Preceding gene: 218883406

Following gene: 218883403

Centisome position: 5.98

GC content: 51.21

Gene sequence:

>1320_bases
TTGTCGGGGATAAACAGCCTAGTTAAGTTCTACGTTGTTGGAAGCATCCCGAGTAGTGTACAGCAACTCTTCAAGTCATT
GGGCATACAGCTCACCTACATACCGCTAGAAGGAGGCTTAGCAAGAGCGACTAAGCTTGAGGACAACTCAGTCGTAGTAA
TCAATACGCGGGATGCGGGACTCAAGCCCCTAAACTACTACTACGTGCTTACAAGGCTACTCGACAAAGCCTCCAACTAC
ATAATCGTGCTCGTCAACAAGGATCCAAAGGCGCGGGACCATTCAGTGCTAGACGCTCACGCCTCAGTCTTCAAAGTACT
CTCACAGGTCTACGGCAAGACCTACGAACCGGTAATGGTGTGCGACCCAAGCGACGAGACTCTATGGCAACCTAGAGAAG
GCGAGAAGCCCAGTGGTTGCAGACTACACCCAGCAGTAGTTAGCGCGGATGCCGTGGCCTACTACACGAGACCCCCGGGC
ACTGTAGTAGTTGAAAACCTGGACGAAAACAACGCAGCCAGCGTGGTGGTCTTCATATTGAAGGCCTACTTACCCAACAG
CGTGTTCACCAAGCTCGCGACTCTCTTGCCTAGAGACCTTGTTCCATCAACGTCGATTAAGGAGGGGCCTAGCAACATGG
TTCCGCTGGGCACCGTTGGCTGGATCACAAACTACACGAGGGGGAGAACGTGTGGAGAAATCACAGGCTACCAGTCATTT
TACATCCGATATTTCTACGGGAACATTACGTTGGCCACCGGCACTCTCTACCACGTGTTTTACGCATATGCTGTTCACTC
GGGTAAGGGTTACCAGACCACTTGTTGGTGGTCTACAATTAACCACTACCCAAGAGTATTTGAAACCGTAATATACTGGA
AGACTGACACCTATCCTGGTCAAGTACTGGACGACTGGGGTCCCAAGAACGCCGGCTCGCAGAGGGTAATAACCTACACC
GTGTCAGCGGGCATGGCTATTGGCAAGGACTTTTCTGCTACTATTGAATACTCGACAGGTTTTACGGAGCCAAACGCGCC
ATACTATACGTGGATGGACTTAACAGACCCGCCTTTAGGTAAGGTCAAAGTGAGACACATAGTTGAAAGAGGGGGGTGGC
CTGAGGACCGGCTGAACGATGTGTTATTTACGGTCGAGCCGAGTAGCTATGGATACTTAGACCCCAACAAGCCTGGTGGA
TACCTGCCAATGGTGGTATATCACTCGATGTACATGGAGCTGAACACCGGTGACAGCACGAACGTCACGATAGCCGCCCT
TTTGCGGACCAATAGCTATGACTGGTGGTTCACGTCTTAG

Upstream 100 bases:

>100_bases
AGCGTTGCTGATCTCCGTTCTCGTAATCACCTCAGTACTTTACGGGTACCACGTTCAAACATTTAGTAGCGCGGTTGCTG
GAGGGTCGCGGTCTTACGAC

Downstream 100 bases:

>100_bases
CTTTATCTGATTCACTTTTTTTCCCGCTACGTCTCCTCTACGAACCCGCAGTAACTGGGGCGAGTTTATGGTCGAGAACC
CTTTGCTTGCATTGAGTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MSGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAGLKPLNYYYVLTRLLDKASNY
IIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMVCDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPG
TVVVENLDENNAASVVVFILKAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF
YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPGQVLDDWGPKNAGSQRVITYT
VSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLGKVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGG
YLPMVVYHSMYMELNTGDSTNVTIAALLRTNSYDWWFTS

Sequences:

>Translated_439_residues
MSGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAGLKPLNYYYVLTRLLDKASNY
IIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMVCDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPG
TVVVENLDENNAASVVVFILKAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF
YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPGQVLDDWGPKNAGSQRVITYT
VSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLGKVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGG
YLPMVVYHSMYMELNTGDSTNVTIAALLRTNSYDWWFTS
>Mature_438_residues
SGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAGLKPLNYYYVLTRLLDKASNYI
IVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMVCDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPGT
VVVENLDENNAASVVVFILKAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSFY
IRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPGQVLDDWGPKNAGSQRVITYTV
SAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLGKVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGGY
LPMVVYHSMYMELNTGDSTNVTIAALLRTNSYDWWFTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49052; Mature: 48921

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAG
CCCHHHHEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
LKPLNYYYVLTRLLDKASNYIIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMV
CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
CDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPGTVVVENLDENNAASVVVFIL
ECCCCCCCCCCCCCCCCCCCEECHHEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHH
KAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF
HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEE
YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPG
EEEEEECCEEEEHHHHHHHHHHHEEECCCCCEEEEEHHHHHCCHHHEEEEEEEECCCCCC
QVLDDWGPKNAGSQRVITYTVSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLG
CCCCCCCCCCCCCCEEEEEEEECCEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCC
KVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGGYLPMVVYHSMYMELNTGDST
HHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEHHHEEEEEEEEEECCCCC
NVTIAALLRTNSYDWWFTS
CEEEEEEEECCCCCEEEEC
>Mature Secondary Structure 
SGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAG
CCHHHHEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
LKPLNYYYVLTRLLDKASNYIIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMV
CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
CDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPGTVVVENLDENNAASVVVFIL
ECCCCCCCCCCCCCCCCCCCEECHHEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHH
KAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF
HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEE
YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPG
EEEEEECCEEEEHHHHHHHHHHHEEECCCCCEEEEEHHHHHCCHHHEEEEEEEECCCCCC
QVLDDWGPKNAGSQRVITYTVSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLG
CCCCCCCCCCCCCCEEEEEEEECCEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCC
KVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGGYLPMVVYHSMYMELNTGDST
HHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEHHHEEEEEEEEEECCCCC
NVTIAALLRTNSYDWWFTS
CEEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA