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The map label for this gene is ybfI [H]

Identifier: 218710965

GI number: 218710965

Start: 3223834

End: 3224628

Strand: Direct

Name: ybfI [H]

Synonym: VS_3079

Alternate gene names: 218710965

Gene position: 3223834-3224628 (Clockwise)

Preceding gene: 218710964

Following gene: 218710966

Centisome position: 97.71

GC content: 44.15

Gene sequence:

>795_bases
ATGGATAAAGTCCACTACTACTCTACCCCAACAGAAGATATCAGCCTGATCCAAGCTCAGTACCAAGAGTTTGCCTTTCA
GCGCCACTATCATTTGGACTTTCACATTGGCTTAATTACCCAAGGACAGCAGAAATTCGTCTATAAAGGGACGAGCCATA
ATGTTGGTGCTGGCCAAGTTGTTATCATGCCACCCGATGAGTTGCATGATGGGCACTCCAAGCTCGATTCGGGTTATCAA
GTCAGTGTGTTTGCGGTTTCTCCCCAATGGTTTCAAGATCTTGCCGATCCCAAGGAAAATGGTCACACATTAGGCTTTTC
TGAGTTGATCCTCTCCGATCAAGCTGCATTTTCACAATTACGCAACTTACATGGCCTGTTAATCAATCAAAACATCAGCC
AACTCGCTCAAGACTGCTTACCTTTCGAAGGATTCTCGACGATTGTCGATCGTTATGCGAAATTTGGATCGAAAAGCGAC
ATCAAACTGGGTAATCAATCGATTGATACACTAAAAGACTATTTGATGGCGAATTTGGATCAACCAGTGCGATTAGAACA
ACTGTCTGAGTTGTGTGGTTTAACCACGACTCAATTCCAACGCCATTTTAAAAACAAAATGGGCATTACGCCTTATGCAT
GGCTAAGCCGTTTACGCATGGAACAAAGCATGCGCCTGATTAAGTCTGGGATATGTGGTACTAAGGTTGCGCACCAAGTA
GGCTTCTATGATCAGGCACACTTCTCTAAGGCTTTCAAAACCACGTTCGGCGTACCACCCTCACAAATCAACTAA

Upstream 100 bases:

>100_bases
GCGCTAAGCAGTAACACTGATCGTTTTTTACAAGACAATCCCTTAATACGAAGATAAGCTTGGTTGAATTGATGACTATT
TGACCAAGCTTTTTTGTACC

Downstream 100 bases:

>100_bases
GTGTTGATAATTTACAATTGCTCGATTTCAAATCACGGTAAGCTACGCTCAATACGATTACTTATTTAAAAATAGCGGCA
ACGTTATTGAGAACTGATGA

Product: transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDKVHYYSTPTEDISLIQAQYQEFAFQRHYHLDFHIGLITQGQQKFVYKGTSHNVGAGQVVIMPPDELHDGHSKLDSGYQ
VSVFAVSPQWFQDLADPKENGHTLGFSELILSDQAAFSQLRNLHGLLINQNISQLAQDCLPFEGFSTIVDRYAKFGSKSD
IKLGNQSIDTLKDYLMANLDQPVRLEQLSELCGLTTTQFQRHFKNKMGITPYAWLSRLRMEQSMRLIKSGICGTKVAHQV
GFYDQAHFSKAFKTTFGVPPSQIN

Sequences:

>Translated_264_residues
MDKVHYYSTPTEDISLIQAQYQEFAFQRHYHLDFHIGLITQGQQKFVYKGTSHNVGAGQVVIMPPDELHDGHSKLDSGYQ
VSVFAVSPQWFQDLADPKENGHTLGFSELILSDQAAFSQLRNLHGLLINQNISQLAQDCLPFEGFSTIVDRYAKFGSKSD
IKLGNQSIDTLKDYLMANLDQPVRLEQLSELCGLTTTQFQRHFKNKMGITPYAWLSRLRMEQSMRLIKSGICGTKVAHQV
GFYDQAHFSKAFKTTFGVPPSQIN
>Mature_264_residues
MDKVHYYSTPTEDISLIQAQYQEFAFQRHYHLDFHIGLITQGQQKFVYKGTSHNVGAGQVVIMPPDELHDGHSKLDSGYQ
VSVFAVSPQWFQDLADPKENGHTLGFSELILSDQAAFSQLRNLHGLLINQNISQLAQDCLPFEGFSTIVDRYAKFGSKSD
IKLGNQSIDTLKDYLMANLDQPVRLEQLSELCGLTTTQFQRHFKNKMGITPYAWLSRLRMEQSMRLIKSGICGTKVAHQV
GFYDQAHFSKAFKTTFGVPPSQIN

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29895; Mature: 29895

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVHYYSTPTEDISLIQAQYQEFAFQRHYHLDFHIGLITQGQQKFVYKGTSHNVGAGQV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEECCCCCCCCCEE
VIMPPDELHDGHSKLDSGYQVSVFAVSPQWFQDLADPKENGHTLGFSELILSDQAAFSQL
EEECCHHHCCCHHHHCCCCEEEEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
RNLHGLLINQNISQLAQDCLPFEGFSTIVDRYAKFGSKSDIKLGNQSIDTLKDYLMANLD
HHHHHEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
QPVRLEQLSELCGLTTTQFQRHFKNKMGITPYAWLSRLRMEQSMRLIKSGICGTKVAHQV
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GFYDQAHFSKAFKTTFGVPPSQIN
CCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDKVHYYSTPTEDISLIQAQYQEFAFQRHYHLDFHIGLITQGQQKFVYKGTSHNVGAGQV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEECCCCCCCCCEE
VIMPPDELHDGHSKLDSGYQVSVFAVSPQWFQDLADPKENGHTLGFSELILSDQAAFSQL
EEECCHHHCCCHHHHCCCCEEEEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
RNLHGLLINQNISQLAQDCLPFEGFSTIVDRYAKFGSKSDIKLGNQSIDTLKDYLMANLD
HHHHHEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
QPVRLEQLSELCGLTTTQFQRHFKNKMGITPYAWLSRLRMEQSMRLIKSGICGTKVAHQV
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GFYDQAHFSKAFKTTFGVPPSQIN
CCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]