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The map label for this gene is rarD [C]

Identifier: 218710964

GI number: 218710964

Start: 3222839

End: 3223747

Strand: Direct

Name: rarD [C]

Synonym: VS_3078

Alternate gene names: 218710964

Gene position: 3222839-3223747 (Clockwise)

Preceding gene: 218710960

Following gene: 218710965

Centisome position: 97.68

GC content: 47.52

Gene sequence:

>909_bases
ATGACACAAGACGACCAACAACGTACGCGACAGGGAATTTTGCTTGCCGTTGCCGCTTACACCATGTGGGGAATCGCTCC
CATATATTTCAAATCTTTAAGTGAAGTATCCCCATTTGAGATTCTTAGCCACCGTGTAGTATGGTCTTTTTTCCTACTCG
CTTTCTTACTGCACATTGGCCGCAGCTGGCGTAAAGTCCGCGACACCCTCACCTCGAAACCAAAAATGCTCTATTTGGTG
GCGACCTCTACTTTAGTGGGTGCCAACTGGCTTATTTTTATTTGGGCGGTGAATTCCAATCACATGCTCGATGCCAGCTT
AGGCTATTACATCAATCCGCTGATTAACGTGTTGCTCGGGATGTTCTTCCTTGGCGAACGCTTACGCAAGCTTCAATGGT
TTGCGGTTGCTCTGGCTGCGATTGGCGTGATAATTCAATTGATCGCGTTTGGCTCTGTGCCGATCGTTGCCATTGCCCTA
GCCTTCAGCTTTGGTTTCTATGGCCTGCTACGTAAAAAGGTGAGCTTGGAAGCTCAAACTGGCTTATTCATTGAGACGCT
GGTGATGCTGCCTATCGCCGCAACGTACCTATTGTTTATCGCAGACAGTGCAACGTCAGATTTATCGATGAACCCAATGC
AACTCAATCTATTATTGGTTGCAGCAGGTGTGATCACCACGGTTCCACTGCTTTGTTTTACTGGCGCTGCAACCCGCTTG
AAGCTATCGACACTCGGTTTCTTCCAGTACATCGGCCCAAGCTTAATGTTCTTACTGGCGGTCCTTATTTACGGTGAAGC
CCTTACTTCAGATAAAGCGATTACCTTCGCCTTTATTTGGGGCGCTCTGGTGATTTTCAGCTTTGATGGCCTACGTAACA
ACAAGAAGAACAAACGCGCTAAGCAGTAA

Upstream 100 bases:

>100_bases
TTAAACCGCAAATTGTTAGGTGAAAAGGGTTAACGCTCCTATACTGACCAACTCTCTTTATAAATCTTATTAATAAGCAC
TCAGTGCTAGAGAAAGTTAC

Downstream 100 bases:

>100_bases
CACTGATCGTTTTTTACAAGACAATCCCTTAATACGAAGATAAGCTTGGTTGAATTGATGACTATTTGACCAAGCTTTTT
TGTACCATGGATAAAGTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTQDDQQRTRQGILLAVAAYTMWGIAPIYFKSLSEVSPFEILSHRVVWSFFLLAFLLHIGRSWRKVRDTLTSKPKMLYLV
ATSTLVGANWLIFIWAVNSNHMLDASLGYYINPLINVLLGMFFLGERLRKLQWFAVALAAIGVIIQLIAFGSVPIVAIAL
AFSFGFYGLLRKKVSLEAQTGLFIETLVMLPIAATYLLFIADSATSDLSMNPMQLNLLLVAAGVITTVPLLCFTGAATRL
KLSTLGFFQYIGPSLMFLLAVLIYGEALTSDKAITFAFIWGALVIFSFDGLRNNKKNKRAKQ

Sequences:

>Translated_302_residues
MTQDDQQRTRQGILLAVAAYTMWGIAPIYFKSLSEVSPFEILSHRVVWSFFLLAFLLHIGRSWRKVRDTLTSKPKMLYLV
ATSTLVGANWLIFIWAVNSNHMLDASLGYYINPLINVLLGMFFLGERLRKLQWFAVALAAIGVIIQLIAFGSVPIVAIAL
AFSFGFYGLLRKKVSLEAQTGLFIETLVMLPIAATYLLFIADSATSDLSMNPMQLNLLLVAAGVITTVPLLCFTGAATRL
KLSTLGFFQYIGPSLMFLLAVLIYGEALTSDKAITFAFIWGALVIFSFDGLRNNKKNKRAKQ
>Mature_301_residues
TQDDQQRTRQGILLAVAAYTMWGIAPIYFKSLSEVSPFEILSHRVVWSFFLLAFLLHIGRSWRKVRDTLTSKPKMLYLVA
TSTLVGANWLIFIWAVNSNHMLDASLGYYINPLINVLLGMFFLGERLRKLQWFAVALAAIGVIIQLIAFGSVPIVAIALA
FSFGFYGLLRKKVSLEAQTGLFIETLVMLPIAATYLLFIADSATSDLSMNPMQLNLLLVAAGVITTVPLLCFTGAATRLK
LSTLGFFQYIGPSLMFLLAVLIYGEALTSDKAITFAFIWGALVIFSFDGLRNNKKNKRAKQ

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=60, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33566; Mature: 33435

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQDDQQRTRQGILLAVAAYTMWGIAPIYFKSLSEVSPFEILSHRVVWSFFLLAFLLHIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
RSWRKVRDTLTSKPKMLYLVATSTLVGANWLIFIWAVNSNHMLDASLGYYINPLINVLLG
HHHHHHHHHHCCCCCEEEEEEEHHHHCCCEEEEEEEECCCCEEECHHHHHHHHHHHHHHH
MFFLGERLRKLQWFAVALAAIGVIIQLIAFGSVPIVAIALAFSFGFYGLLRKKVSLEAQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLFIETLVMLPIAATYLLFIADSATSDLSMNPMQLNLLLVAAGVITTVPLLCFTGAATRL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHE
KLSTLGFFQYIGPSLMFLLAVLIYGEALTSDKAITFAFIWGALVIFSFDGLRNNKKNKRA
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KQ
CC
>Mature Secondary Structure 
TQDDQQRTRQGILLAVAAYTMWGIAPIYFKSLSEVSPFEILSHRVVWSFFLLAFLLHIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
RSWRKVRDTLTSKPKMLYLVATSTLVGANWLIFIWAVNSNHMLDASLGYYINPLINVLLG
HHHHHHHHHHCCCCCEEEEEEEHHHHCCCEEEEEEEECCCCEEECHHHHHHHHHHHHHHH
MFFLGERLRKLQWFAVALAAIGVIIQLIAFGSVPIVAIALAFSFGFYGLLRKKVSLEAQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLFIETLVMLPIAATYLLFIADSATSDLSMNPMQLNLLLVAAGVITTVPLLCFTGAATRL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHE
KLSTLGFFQYIGPSLMFLLAVLIYGEALTSDKAITFAFIWGALVIFSFDGLRNNKKNKRA
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]