Click here to switch to the map view.

The map label for this gene is yigB [H]

Identifier: 218710941

GI number: 218710941

Start: 3191957

End: 3192673

Strand: Reverse

Name: yigB [H]

Synonym: VS_3044

Alternate gene names: 218710941

Gene position: 3192673-3191957 (Counterclockwise)

Preceding gene: 218710942

Following gene: 218710940

Centisome position: 96.77

GC content: 44.77

Gene sequence:

>717_bases
ATGCGAATTTATCGAGGGTTAAAGCCCATCAAAGCCATGACCTTTGATTTGGATGATACCTTGTACGACAACTGGCCTGT
GATCATGAAGGTTGAGAAAGAGATGGCGCAGTGGCTTTATCAAAAGCATCCTGTGTCTGCTTCTCTTTCGTTAGAAGAGT
GGCAAGGTATCAAACAGCAAGTCGCCTCTGAAAACCCAGCGTTAAAGCATGATGTCACCGTGTGGCGAGAAACACAGATT
AAGCGTGGTTTGTTACAACTGGGGTATTCTCATCAGCAAGCAGAACAAGCGGCTCGTGAAGGCATAGAACACGCCTTGTG
GCTGCGAAATCAGGTGGATGTGCCACAAGAAACGCATCGAGTGATGGCTGAGCTGAGCCAACGTATTCCTTTAGTTGCGA
TTACTAATGGCAATGTCGACCCACATAAAATTGGCTTGGGGCAGTACTTCCAATTAATCCTTAAAGCCGGTCCTGACGGC
AGAGCAAAACCCTACCCAGATATGTTTGATAGAGCTCAGCAATACCTAAATTGTGACGCTGAGAATATTCTCCATGTTGG
TGACCATCTTAGAACCGATGTCTATGGAGCGAAGACAAATGGTTTCCAAGCATGCTGGTTTAATGATACTGGTTCCAATT
TATATGATTTCCCTAAGGCAACAGTGCTGCCTGATGTTGAAATAGAGCAACTTAGTGATCTTATGCGATTAACTTAA

Upstream 100 bases:

>100_bases
AGTGTACACTCACTTAGATTTCCAACATTTAGCACAAGCTTATGACCAAGCTCATCCAAGAGCTCGTAAGAAGAATAAAG
ATTAGATTAAAGGTTTAACT

Downstream 100 bases:

>100_bases
TGGCCGTAGTAAGCTTAATGTGTCGCATTTATGATATTGAATTGTTACATTAGTCACAATTAAATGCCTGTTTAGGCTAG
GATAATTGGCGACTACTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRIYRGLKPIKAMTFDLDDTLYDNWPVIMKVEKEMAQWLYQKHPVSASLSLEEWQGIKQQVASENPALKHDVTVWRETQI
KRGLLQLGYSHQQAEQAAREGIEHALWLRNQVDVPQETHRVMAELSQRIPLVAITNGNVDPHKIGLGQYFQLILKAGPDG
RAKPYPDMFDRAQQYLNCDAENILHVGDHLRTDVYGAKTNGFQACWFNDTGSNLYDFPKATVLPDVEIEQLSDLMRLT

Sequences:

>Translated_238_residues
MRIYRGLKPIKAMTFDLDDTLYDNWPVIMKVEKEMAQWLYQKHPVSASLSLEEWQGIKQQVASENPALKHDVTVWRETQI
KRGLLQLGYSHQQAEQAAREGIEHALWLRNQVDVPQETHRVMAELSQRIPLVAITNGNVDPHKIGLGQYFQLILKAGPDG
RAKPYPDMFDRAQQYLNCDAENILHVGDHLRTDVYGAKTNGFQACWFNDTGSNLYDFPKATVLPDVEIEQLSDLMRLT
>Mature_238_residues
MRIYRGLKPIKAMTFDLDDTLYDNWPVIMKVEKEMAQWLYQKHPVSASLSLEEWQGIKQQVASENPALKHDVTVWRETQI
KRGLLQLGYSHQQAEQAAREGIEHALWLRNQVDVPQETHRVMAELSQRIPLVAITNGNVDPHKIGLGQYFQLILKAGPDG
RAKPYPDMFDRAQQYLNCDAENILHVGDHLRTDVYGAKTNGFQACWFNDTGSNLYDFPKATVLPDVEIEQLSDLMRLT

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjjG [H]

Homologues:

Organism=Escherichia coli, GI2367295, Length=238, Percent_Identity=44.9579831932773, Blast_Score=208, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 27315; Mature: 27315

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00761 SPASE_I_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIYRGLKPIKAMTFDLDDTLYDNWPVIMKVEKEMAQWLYQKHPVSASLSLEEWQGIKQQ
CCCCCCCCCHHHEEECCCCHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VASENPALKHDVTVWRETQIKRGLLQLGYSHQQAEQAAREGIEHALWLRNQVDVPQETHR
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VMAELSQRIPLVAITNGNVDPHKIGLGQYFQLILKAGPDGRAKPYPDMFDRAQQYLNCDA
HHHHHHHCCCEEEEECCCCCHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCH
ENILHVGDHLRTDVYGAKTNGFQACWFNDTGSNLYDFPKATVLPDVEIEQLSDLMRLT
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRIYRGLKPIKAMTFDLDDTLYDNWPVIMKVEKEMAQWLYQKHPVSASLSLEEWQGIKQQ
CCCCCCCCCHHHEEECCCCHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VASENPALKHDVTVWRETQIKRGLLQLGYSHQQAEQAAREGIEHALWLRNQVDVPQETHR
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VMAELSQRIPLVAITNGNVDPHKIGLGQYFQLILKAGPDGRAKPYPDMFDRAQQYLNCDA
HHHHHHHCCCEEEEECCCCCHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCH
ENILHVGDHLRTDVYGAKTNGFQACWFNDTGSNLYDFPKATVLPDVEIEQLSDLMRLT
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254268; 1379743; 9278503; 6379604; 6324092 [H]