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The map label for this gene is yrbD [C]

Identifier: 218710668

GI number: 218710668

Start: 2914311

End: 2914802

Strand: Reverse

Name: yrbD [C]

Synonym: VS_2748

Alternate gene names: 218710668

Gene position: 2914802-2914311 (Counterclockwise)

Preceding gene: 218710669

Following gene: 218710667

Centisome position: 88.35

GC content: 41.87

Gene sequence:

>492_bases
ATGCAACAAACTCGAAAATTAGAATTATGGGCCGGCACCTTTGTTATTGCCGGAATTTGCGCAATCTTAATCATGATCTT
TCAAGTCGCTGACGTAAAAGGTCTCGGTTCAAACCATACTTATAACTTAAAAGCGACCTTTGATAATATTGGCAGCCTAA
AGGTTCGCTCACCAGTAAAGGTGGGGGGCGTCGTTGTTGGTCGAGTTCAAAGTATTGAACTTGATACTGAGAGCTACCTT
CCTGTGGTTGAACTGTCTATTGATGCGAAGTACTCACAATTTCCTGATACCTCTAGTGCTCAAATCTTAACGTCGGGTTT
GATCGGTGAGCAGTACATCAGCTTAGTTCCAGGCTTCATCTTTGAAGATGAAGAGATGTTGGTTGATGGTGATTCTATCG
AAGACACCAAGTCAGCATTAGTATTAGAAGATTTGATTGGCCAAGTGCTGTATAGCGTTGGTGGTTCTAATGACAGTGAA
GCAAAGGAATAA

Upstream 100 bases:

>100_bases
AAGGTATTAGTCAGGCAACCACACGCACAGTAGTACACTCTTCTCTAGCGGTATTAGGGCTAGATTTTGTTCTTACCGCA
TTGATGTTTGGGAATTAATC

Downstream 100 bases:

>100_bases
GATGATGTTGAAAACTATTAGTCACTTGAAAGCTATTGGTTACTTGAAATCAATGTTTATGGCGGCAATGGCTTTACTTA
TTTCGGCTCAAGCTTTTGCT

Product: ABC transporter type A secreted protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MQQTRKLELWAGTFVIAGICAILIMIFQVADVKGLGSNHTYNLKATFDNIGSLKVRSPVKVGGVVVGRVQSIELDTESYL
PVVELSIDAKYSQFPDTSSAQILTSGLIGEQYISLVPGFIFEDEEMLVDGDSIEDTKSALVLEDLIGQVLYSVGGSNDSE
AKE

Sequences:

>Translated_163_residues
MQQTRKLELWAGTFVIAGICAILIMIFQVADVKGLGSNHTYNLKATFDNIGSLKVRSPVKVGGVVVGRVQSIELDTESYL
PVVELSIDAKYSQFPDTSSAQILTSGLIGEQYISLVPGFIFEDEEMLVDGDSIEDTKSALVLEDLIGQVLYSVGGSNDSE
AKE
>Mature_163_residues
MQQTRKLELWAGTFVIAGICAILIMIFQVADVKGLGSNHTYNLKATFDNIGSLKVRSPVKVGGVVVGRVQSIELDTESYL
PVVELSIDAKYSQFPDTSSAQILTSGLIGEQYISLVPGFIFEDEEMLVDGDSIEDTKSALVLEDLIGQVLYSVGGSNDSE
AKE

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=163, Percent_Identity=53.3742331288344, Blast_Score=160, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17607; Mature: 17607

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTRKLELWAGTFVIAGICAILIMIFQVADVKGLGSNHTYNLKATFDNIGSLKVRSPVK
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCE
VGGVVVGRVQSIELDTESYLPVVELSIDAKYSQFPDTSSAQILTSGLIGEQYISLVPGFI
ECCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
FEDEEMLVDGDSIEDTKSALVLEDLIGQVLYSVGGSNDSEAKE
ECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQQTRKLELWAGTFVIAGICAILIMIFQVADVKGLGSNHTYNLKATFDNIGSLKVRSPVK
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCE
VGGVVVGRVQSIELDTESYLPVVELSIDAKYSQFPDTSSAQILTSGLIGEQYISLVPGFI
ECCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
FEDEEMLVDGDSIEDTKSALVLEDLIGQVLYSVGGSNDSEAKE
ECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]