| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is gluQ [H]
Identifier: 218710490
GI number: 218710490
Start: 2718917
End: 2719819
Strand: Direct
Name: gluQ [H]
Synonym: VS_2529
Alternate gene names: 218710490
Gene position: 2718917-2719819 (Clockwise)
Preceding gene: 218710489
Following gene: 218710491
Centisome position: 82.41
GC content: 45.29
Gene sequence:
>903_bases ATGAATTATATCGGACGCTTTGCACCATCACCGTCAGGTCCTCTTCATTTTGGCTCACTGGTTGCTGCTCTTGGTAGCTA CTTTCAAGCGAAATCTAACCAAGGACAATGGTTAGTTCGTATGGAAGACCTCGATCCACCAAGAGAAATGGCTGGCGCTG CAGACCTCATTCTTAAGACGCTTGAGGCTTACCACCTGTATTGGGACGGTGAAGTCGTTTATCAAAGCCAGCGTCATGAC CTATATCAAGCTCAAATTGATCAATGGGTCACTGACAATCAGGCCTACTACTGTCAATGTACCCGTAAGCAGATAAAGTC CTTGGGTGGGTTTTATAGTGGCCGCTGCCGAGACAAAGGTTTGGTTGATTCAGGCGAACAGGCGGTGCGCTTGTGTATGG ACTTTCCCATCGAGTCCTTTGACGATGTTCGTCACGGCACGATTCAAATTCCCAAAGCATTGGCTGAAGAAGATTTTATT ATCAAACGCAGAGATGGGTTGTTTGCCTATAACTTGGCAGTTGTCCTTGATGACATCGAACAAGGGGTAACAGAAGTCGT TAGAGGTGCAGATCTGATAGAACCAACAGGTCGACAAATCAGTTTGTATAAGACGCTCAAGCAAAAAAACGTGAGCTACT TGCACTTACCATTGGCAACCGATGGCTTGGGGAATAAACTGTCAAAACAAAATCATGCCACCGCGATAGAGCTCGACAAC CCAAAACCGACGTTAATCAATGCGATGCGATTCTTAGGTTTTGATATCCCGAATGCTCTTTTCGAAGCGTCAATGGATGA AGTTTTATTGTGGGGCTGCCAGCAATGGAACGTCACTCAGTTACCTGATAGTTTACAAAAAGAGCACAGTAATGAGTTCG AAACTAACGGCAAATCGCAATAA
Upstream 100 bases:
>100_bases TTCTAAAAAGCGGTTTATATCGTTGTTGATAGCGATAAACTAATCGCCAAACGTCTTAAGAATCGGCTACTGCGGTACCA TCAAGATTAGGTTTTCACTT
Downstream 100 bases:
>100_bases CGATACATAAAAATACCCTAACAAATACCTGCGACTAAGCAGACGATGTTCTCAAATGGCTCGCGCTAAGCTATTATTAG CCGCAATTAAACTCTGCACT
Product: glutamyl-Q tRNA(Asp) synthetase
Products: NA
Alternate protein names: Glu-Q-RSs [H]
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MNYIGRFAPSPSGPLHFGSLVAALGSYFQAKSNQGQWLVRMEDLDPPREMAGAADLILKTLEAYHLYWDGEVVYQSQRHD LYQAQIDQWVTDNQAYYCQCTRKQIKSLGGFYSGRCRDKGLVDSGEQAVRLCMDFPIESFDDVRHGTIQIPKALAEEDFI IKRRDGLFAYNLAVVLDDIEQGVTEVVRGADLIEPTGRQISLYKTLKQKNVSYLHLPLATDGLGNKLSKQNHATAIELDN PKPTLINAMRFLGFDIPNALFEASMDEVLLWGCQQWNVTQLPDSLQKEHSNEFETNGKSQ
Sequences:
>Translated_300_residues MNYIGRFAPSPSGPLHFGSLVAALGSYFQAKSNQGQWLVRMEDLDPPREMAGAADLILKTLEAYHLYWDGEVVYQSQRHD LYQAQIDQWVTDNQAYYCQCTRKQIKSLGGFYSGRCRDKGLVDSGEQAVRLCMDFPIESFDDVRHGTIQIPKALAEEDFI IKRRDGLFAYNLAVVLDDIEQGVTEVVRGADLIEPTGRQISLYKTLKQKNVSYLHLPLATDGLGNKLSKQNHATAIELDN PKPTLINAMRFLGFDIPNALFEASMDEVLLWGCQQWNVTQLPDSLQKEHSNEFETNGKSQ >Mature_300_residues MNYIGRFAPSPSGPLHFGSLVAALGSYFQAKSNQGQWLVRMEDLDPPREMAGAADLILKTLEAYHLYWDGEVVYQSQRHD LYQAQIDQWVTDNQAYYCQCTRKQIKSLGGFYSGRCRDKGLVDSGEQAVRLCMDFPIESFDDVRHGTIQIPKALAEEDFI IKRRDGLFAYNLAVVLDDIEQGVTEVVRGADLIEPTGRQISLYKTLKQKNVSYLHLPLATDGLGNKLSKQNHATAIELDN PKPTLINAMRFLGFDIPNALFEASMDEVLLWGCQQWNVTQLPDSLQKEHSNEFETNGKSQ
Specific function: Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble positi
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=300, Percent_Identity=29.6666666666667, Blast_Score=118, Evalue=5e-27, Organism=Escherichia coli, GI226510925, Length=285, Percent_Identity=54.3859649122807, Blast_Score=308, Evalue=3e-85, Organism=Escherichia coli, GI1788743, Length=248, Percent_Identity=34.2741935483871, Blast_Score=137, Evalue=8e-34, Organism=Caenorhabditis elegans, GI71993394, Length=250, Percent_Identity=30, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6324540, Length=254, Percent_Identity=30.3149606299213, Blast_Score=117, Evalue=2e-27, Organism=Drosophila melanogaster, GI24665321, Length=261, Percent_Identity=28.735632183908, Blast_Score=107, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022380 - InterPro: IPR000924 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: NA
Molecular weight: Translated: 33868; Mature: 33868
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYIGRFAPSPSGPLHFGSLVAALGSYFQAKSNQGQWLVRMEDLDPPREMAGAADLILKT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH LEAYHLYWDGEVVYQSQRHDLYQAQIDQWVTDNQAYYCQCTRKQIKSLGGFYSGRCRDKG HHHHEEEECCEEEEECHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCC LVDSGEQAVRLCMDFPIESFDDVRHGTIQIPKALAEEDFIIKRRDGLFAYNLAVVLDDIE CCCCCHHHHHHHHHCCCCHHHHCCCCEEECCHHHCCCCCEEEECCCCEEEHHHHHHHHHH QGVTEVVRGADLIEPTGRQISLYKTLKQKNVSYLHLPLATDGLGNKLSKQNHATAIELDN HHHHHHHHCCCCCCCCCCEEHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCEEEEECC PKPTLINAMRFLGFDIPNALFEASMDEVLLWGCQQWNVTQLPDSLQKEHSNEFETNGKSQ CCHHHHHHHHHHCCCCCHHHHHHCHHHHHHHCCCCCCHHHCCHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNYIGRFAPSPSGPLHFGSLVAALGSYFQAKSNQGQWLVRMEDLDPPREMAGAADLILKT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH LEAYHLYWDGEVVYQSQRHDLYQAQIDQWVTDNQAYYCQCTRKQIKSLGGFYSGRCRDKG HHHHEEEECCEEEEECHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCC LVDSGEQAVRLCMDFPIESFDDVRHGTIQIPKALAEEDFIIKRRDGLFAYNLAVVLDDIE CCCCCHHHHHHHHHCCCCHHHHCCCCEEECCHHHCCCCCEEEECCCCEEEHHHHHHHHHH QGVTEVVRGADLIEPTGRQISLYKTLKQKNVSYLHLPLATDGLGNKLSKQNHATAIELDN HHHHHHHHCCCCCCCCCCEEHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCEEEEECC PKPTLINAMRFLGFDIPNALFEASMDEVLLWGCQQWNVTQLPDSLQKEHSNEFETNGKSQ CCHHHHHHHHHHCCCCCHHHHHHCHHHHHHHCCCCCCHHHCCHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA