| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is appF [H]
Identifier: 218710471
GI number: 218710471
Start: 2690840
End: 2691835
Strand: Direct
Name: appF [H]
Synonym: VS_2510
Alternate gene names: 218710471
Gene position: 2690840-2691835 (Clockwise)
Preceding gene: 218710470
Following gene: 218710472
Centisome position: 81.56
GC content: 45.88
Gene sequence:
>996_bases ATGAGCAAAGATTTCGGTCAATTATTGGTAGAAGGCAAGAATGTCGTAAAAGACTTCCCAATAAGCAGTACCACAATTCA AACCCCAATGATGCGTGCGATTAACGACGTATCATTCAAGATGTATAAAAGTCGCGGCCTAGCTGTGGTTGGTGAGTCTG GTTCAGGCAAATCAACAACAGCAAAAATGATCGCAAAAATGTACGCGCCTTCGGGCGGTACGATCGAATACAAAGGTCGT GATATCCAAGAGATCTCAAGCAGAAAAGATCTTATGCACTACCGTGAAGGTGTGCAGATGGTATGGCAAGACCCGTTTGG TTCCCTGAACCCAACACATAACATCTTTCACCACATAGCTCGACCATTGTTGATCCACAAAAAAGTATCTCCGGGCAACA AGAAAGAGTTACAGGAACGTGTGTACGATCTTCTAGAGCAAGTTGGCTTAGTGCCACCACAAGCAACGGCAGAGAAGTAC CCTCATCAACTCTCTGGTGGTCAGCGTCAACGTGTCAACCTAGCCCGTAACATTGCAGTTGGTGCAGAAGTTGTATTAGC CGATGAACCAACATCGATGCTTGATGTATCGATTCGTGCTGGTGTTTTGAACCTGATGGAAGAAATGAAGTTTGAGAAAC AAATGTCTCTACTTTACATCACCCACGATATCGCAACCGCTCGTTACATTGCTGAAGATCTTTCAGTGATGTACGTAGGA CACATGGTGGAATGGGGCGATACCGATGATGTGATTGCTAACCCTCAGCATCCTTACACCCAACTGCTTGTTTCTGCGGT TCCAGATCCTAAAAAATCGATCCACGAACAACTCGCAGGCAACAAAGGTGAGATCCCTCTTTGGACACCAGTCTCTGCAG GTTGCCCATTTGCAGGCCGTTGCACTCATGCAATGGACAAGTGTAAAGAGCAGTTACCAGGGGTTACGCAGTTAGCTGAT AACCACTTTGTGCGTTGTTACCTACACGAAAGCTAA
Upstream 100 bases:
>100_bases AAGGAAGCTATAGCTTGCACGCTGATTCAGCGTGAATAACGAATAAGGCGGCTCGACCGCCGAAATGCAAGCAAAGCGAA TAAGGATTCTGGAGACAATT
Downstream 100 bases:
>100_bases GCAATAAAACCAAGTTAGGGTCTGCGGGCCCTAACTATTTATATCCAAAACATTTTATATCCAAAACATTCAAGTACCTA GCCAATAGAAACTAGGACTG
Product: peptide ABC transporter ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSKDFGQLLVEGKNVVKDFPISSTTIQTPMMRAINDVSFKMYKSRGLAVVGESGSGKSTTAKMIAKMYAPSGGTIEYKGR DIQEISSRKDLMHYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVSPGNKKELQERVYDLLEQVGLVPPQATAEKY PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLSVMYVG HMVEWGDTDDVIANPQHPYTQLLVSAVPDPKKSIHEQLAGNKGEIPLWTPVSAGCPFAGRCTHAMDKCKEQLPGVTQLAD NHFVRCYLHES
Sequences:
>Translated_331_residues MSKDFGQLLVEGKNVVKDFPISSTTIQTPMMRAINDVSFKMYKSRGLAVVGESGSGKSTTAKMIAKMYAPSGGTIEYKGR DIQEISSRKDLMHYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVSPGNKKELQERVYDLLEQVGLVPPQATAEKY PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLSVMYVG HMVEWGDTDDVIANPQHPYTQLLVSAVPDPKKSIHEQLAGNKGEIPLWTPVSAGCPFAGRCTHAMDKCKEQLPGVTQLAD NHFVRCYLHES >Mature_330_residues SKDFGQLLVEGKNVVKDFPISSTTIQTPMMRAINDVSFKMYKSRGLAVVGESGSGKSTTAKMIAKMYAPSGGTIEYKGRD IQEISSRKDLMHYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVSPGNKKELQERVYDLLEQVGLVPPQATAEKYP HQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLSVMYVGH MVEWGDTDDVIANPQHPYTQLLVSAVPDPKKSIHEQLAGNKGEIPLWTPVSAGCPFAGRCTHAMDKCKEQLPGVTQLADN HFVRCYLHES
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=29.3388429752066, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=26.4957264957265, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI255708477, Length=314, Percent_Identity=23.8853503184713, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=23.0046948356808, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI171184400, Length=267, Percent_Identity=27.7153558052434, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI9961252, Length=228, Percent_Identity=28.5087719298246, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI9961250, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI4505771, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI42741659, Length=225, Percent_Identity=28, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI150417984, Length=215, Percent_Identity=25.5813953488372, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI21536376, Length=216, Percent_Identity=21.7592592592593, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI21536378, Length=242, Percent_Identity=24.3801652892562, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=20.6572769953052, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=20.6572769953052, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI9955963, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=25.2380952380952, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI30795238, Length=215, Percent_Identity=24.1860465116279, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789962, Length=324, Percent_Identity=36.1111111111111, Blast_Score=218, Evalue=3e-58, Organism=Escherichia coli, GI1787500, Length=299, Percent_Identity=38.1270903010033, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1789963, Length=301, Percent_Identity=36.5448504983389, Blast_Score=204, Evalue=5e-54, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=40.7547169811321, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1787758, Length=321, Percent_Identity=33.9563862928349, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI48994883, Length=317, Percent_Identity=33.1230283911672, Blast_Score=182, Evalue=2e-47, Organism=Escherichia coli, GI1787759, Length=303, Percent_Identity=33.993399339934, Blast_Score=169, Evalue=3e-43, Organism=Escherichia coli, GI1788506, Length=246, Percent_Identity=36.5853658536585, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=32.5581395348837, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=36.1344537815126, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787548, Length=333, Percent_Identity=26.4264264264264, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=29.8755186721992, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=31.7535545023697, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1786398, Length=258, Percent_Identity=29.4573643410853, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1788225, Length=257, Percent_Identity=32.295719844358, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=31.25, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=32.6359832635983, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787029, Length=249, Percent_Identity=31.3253012048193, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=30.8035714285714, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789873, Length=193, Percent_Identity=34.7150259067358, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=31.2217194570136, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1788450, Length=230, Percent_Identity=29.1304347826087, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=28.4584980237154, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=34.070796460177, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=30.5439330543933, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=29.3388429752066, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=257, Percent_Identity=28.4046692607004, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=30.0925925925926, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=30.1369863013699, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787105, Length=217, Percent_Identity=27.1889400921659, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=29.8076923076923, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786698, Length=194, Percent_Identity=28.8659793814433, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=26.7241379310345, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=30.9278350515464, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87082267, Length=263, Percent_Identity=27.3764258555133, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790739, Length=232, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788210, Length=216, Percent_Identity=28.7037037037037, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=205, Percent_Identity=27.8048780487805, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=27.4418604651163, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=29.8701298701299, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786345, Length=234, Percent_Identity=25.2136752136752, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787143, Length=258, Percent_Identity=26.7441860465116, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=26.3392857142857, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1790534, Length=235, Percent_Identity=27.6595744680851, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1787792, Length=270, Percent_Identity=24.8148148148148, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=26.3829787234043, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=23.2558139534884, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17565938, Length=264, Percent_Identity=29.1666666666667, Blast_Score=85, Evalue=7e-17, Organism=Caenorhabditis elegans, GI193208177, Length=237, Percent_Identity=26.1603375527426, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17543740, Length=245, Percent_Identity=28.1632653061224, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17567265, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567269, Length=235, Percent_Identity=28.0851063829787, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=29.6610169491525, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=28.2511210762332, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193211015, Length=230, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996550, Length=218, Percent_Identity=31.1926605504587, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25146777, Length=265, Percent_Identity=26.4150943396226, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996809, Length=230, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71992285, Length=257, Percent_Identity=26.0700389105058, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115535101, Length=226, Percent_Identity=26.5486725663717, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193202349, Length=234, Percent_Identity=22.6495726495727, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558664, Length=210, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=276, Percent_Identity=25.7246376811594, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6323217, Length=258, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323959, Length=245, Percent_Identity=27.7551020408163, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6322640, Length=233, Percent_Identity=27.8969957081545, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6319856, Length=227, Percent_Identity=26.431718061674, Blast_Score=63, Evalue=8e-11, Organism=Drosophila melanogaster, GI23397593, Length=259, Percent_Identity=25.8687258687259, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI116007184, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221500365, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI28574533, Length=257, Percent_Identity=28.4046692607004, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=23.943661971831, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36843; Mature: 36712
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKDFGQLLVEGKNVVKDFPISSTTIQTPMMRAINDVSFKMYKSRGLAVVGESGSGKSTT CCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AKMIAKMYAPSGGTIEYKGRDIQEISSRKDLMHYREGVQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHH RPLLIHKKVSPGNKKELQERVYDLLEQVGLVPPQATAEKYPHQLSGGQRQRVNLARNIAV HHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLSVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDDVIANPQHPYTQLLVSAVPDPKKSIHEQLAGNKGEIPLWTPVSAGCPFAGR HEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCCCH CTHAMDKCKEQLPGVTQLADNHFVRCYLHES HHHHHHHHHHHCCCHHHHCCCCEEEEEEECC >Mature Secondary Structure SKDFGQLLVEGKNVVKDFPISSTTIQTPMMRAINDVSFKMYKSRGLAVVGESGSGKSTT CCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AKMIAKMYAPSGGTIEYKGRDIQEISSRKDLMHYREGVQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHH RPLLIHKKVSPGNKKELQERVYDLLEQVGLVPPQATAEKYPHQLSGGQRQRVNLARNIAV HHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKQMSLLYITHDIATARYIAEDLSVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDDVIANPQHPYTQLLVSAVPDPKKSIHEQLAGNKGEIPLWTPVSAGCPFAGR HEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCCCH CTHAMDKCKEQLPGVTQLADNHFVRCYLHES HHHHHHHHHHHCCCHHHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]