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The map label for this gene is yhbU [H]

Identifier: 218710436

GI number: 218710436

Start: 2644024

End: 2645037

Strand: Direct

Name: yhbU [H]

Synonym: VS_2473

Alternate gene names: 218710436

Gene position: 2644024-2645037 (Clockwise)

Preceding gene: 218710435

Following gene: 218710437

Centisome position: 80.14

GC content: 48.42

Gene sequence:

>1014_bases
ATGGAACTCTTATGCCCAGCGGGTAACTTACCTGCTTTGAAAACCGCTATTGATTGCGGTGCGGATGCTGTCTATATCGG
ATTCAAAGACGATACGAATGCCCGACACTTCGCAGGCCTTAACTTTGCGGGTAAAAAGCTCGATCGTGCTGTGCAGTATG
TGCATGACCGCAACAAGAAAATTCACGTTGCCTTAAATACTTTTGCTCACCCAAACGGCTTCGAACGCTGGACTAACGCT
GTAGATAACGCCGCCGCACTAGGCGTTGATGCGCTGATCATCGCTGACATTGCTGTGCTCGAGTACGCTGCAAATAAATA
TCCAGAACTAGAGCTGCACTTATCAGTACAAGCATCTGCGACCAATGCAGCCGCTATCGACTTCTATCATAAAAATTTCA
ACGTTAAGCGTGTGGTATTGCCGCGCGTATTGTCGATCCATCAGGTCAAACAGCTTTCTCGTAACATCACTTCGGACGTT
GACCTCGAAGTATTCGCTTTTGGTAGCTTATGTATCATGGCAGAAGGCCGTTGCTACCTCTCTTCATACATGACGGGTGA
ATCGCCAAATACGGTTGGGGCATGTTCTCCAGCAAAATACGTTCGCTGGCAAGAAACGGATGGCGGACTTGAATCTCGCT
TGAACGAAATCCTTATCGACAAGTATGAAGCAGGTGAGAACGCAGGTTACCCAACGCTATGTAAAGGCCGATTTGAAGCA
GAAGTAGATGGTGAGCGAAAGCGTTATCACGCACTTGAAGAGCCAACTAGCCTTAACACACTATCTATGTTGCCTGAGCT
TTTCGCCGCGAATGTTGCTTCTGTGAAGATTGAAGGTCGCCAACGTAGCCCTGCTTATGTCGAGCAAGTCACTCGCACTT
GGCGCGCAGCCATCGATCGCTACTTAGCGAACCCTGAACAATACCAAGTGGAACAAGCTTGGAATGCGACACTGGCGAAT
GTATCTGAAGGTACACAAACCACGCTTGGCGCTTACCACCGTAAATGGCAATAG

Upstream 100 bases:

>100_bases
AAAGCAGATTTATCCATCTAAACCTGCCTTACATCAATTCCGTCATTCATAATTCTTCATAAAATACTCGCTTCAATTTT
ATTCTATTGGTAGTGAGCAA

Downstream 100 bases:

>100_bases
AGCCAAATGGAGAACTCAATGAAATACGCATTAGGCCCTCTACTTTATTTTTGGCCAAAACAAGATGTTGAAAGCTTCTA
TGAGCAAGCAAAATCAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFAGKKLDRAVQYVHDRNKKIHVALNTFAHPNGFERWTNA
VDNAAALGVDALIIADIAVLEYAANKYPELELHLSVQASATNAAAIDFYHKNFNVKRVVLPRVLSIHQVKQLSRNITSDV
DLEVFAFGSLCIMAEGRCYLSSYMTGESPNTVGACSPAKYVRWQETDGGLESRLNEILIDKYEAGENAGYPTLCKGRFEA
EVDGERKRYHALEEPTSLNTLSMLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYLANPEQYQVEQAWNATLAN
VSEGTQTTLGAYHRKWQ

Sequences:

>Translated_337_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFAGKKLDRAVQYVHDRNKKIHVALNTFAHPNGFERWTNA
VDNAAALGVDALIIADIAVLEYAANKYPELELHLSVQASATNAAAIDFYHKNFNVKRVVLPRVLSIHQVKQLSRNITSDV
DLEVFAFGSLCIMAEGRCYLSSYMTGESPNTVGACSPAKYVRWQETDGGLESRLNEILIDKYEAGENAGYPTLCKGRFEA
EVDGERKRYHALEEPTSLNTLSMLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYLANPEQYQVEQAWNATLAN
VSEGTQTTLGAYHRKWQ
>Mature_337_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFAGKKLDRAVQYVHDRNKKIHVALNTFAHPNGFERWTNA
VDNAAALGVDALIIADIAVLEYAANKYPELELHLSVQASATNAAAIDFYHKNFNVKRVVLPRVLSIHQVKQLSRNITSDV
DLEVFAFGSLCIMAEGRCYLSSYMTGESPNTVGACSPAKYVRWQETDGGLESRLNEILIDKYEAGENAGYPTLCKGRFEA
EVDGERKRYHALEEPTSLNTLSMLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYLANPEQYQVEQAWNATLAN
VSEGTQTTLGAYHRKWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=337, Percent_Identity=73.2937685459941, Blast_Score=522, Evalue=1e-149,
Organism=Escherichia coli, GI1788397, Length=315, Percent_Identity=29.8412698412698, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87081910, Length=299, Percent_Identity=31.1036789297659, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37405; Mature: 37405

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFAGKKLDRAVQYVHDRNKK
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCE
IHVALNTFAHPNGFERWTNAVDNAAALGVDALIIADIAVLEYAANKYPELELHLSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
TNAAAIDFYHKNFNVKRVVLPRVLSIHQVKQLSRNITSDVDLEVFAFGSLCIMAEGRCYL
CCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEE
SSYMTGESPNTVGACSPAKYVRWQETDGGLESRLNEILIDKYEAGENAGYPTLCKGRFEA
HHHCCCCCCCCCCCCCCHHCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
EVDGERKRYHALEEPTSLNTLSMLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDR
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
YLANPEQYQVEQAWNATLANVSEGTQTTLGAYHRKWQ
HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFAGKKLDRAVQYVHDRNKK
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCE
IHVALNTFAHPNGFERWTNAVDNAAALGVDALIIADIAVLEYAANKYPELELHLSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
TNAAAIDFYHKNFNVKRVVLPRVLSIHQVKQLSRNITSDVDLEVFAFGSLCIMAEGRCYL
CCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEE
SSYMTGESPNTVGACSPAKYVRWQETDGGLESRLNEILIDKYEAGENAGYPTLCKGRFEA
HHHCCCCCCCCCCCCCCHHCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
EVDGERKRYHALEEPTSLNTLSMLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDR
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
YLANPEQYQVEQAWNATLANVSEGTQTTLGAYHRKWQ
HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]