| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is hisB [H]
Identifier: 218710004
GI number: 218710004
Start: 2168428
End: 2169516
Strand: Reverse
Name: hisB [H]
Synonym: VS_2023
Alternate gene names: 218710004
Gene position: 2169516-2168428 (Counterclockwise)
Preceding gene: 218710005
Following gene: 218710003
Centisome position: 65.76
GC content: 45.82
Gene sequence:
>1089_bases GTGAGTAAACAACAGAAAATACTTTTTATAGACCGTGACGGCACCTTAATTGTTGAGCCGCCAGTTGACTTTCAAGTAGA CCGTTTAGACAAACTAAAATTCGAACCGTTAGTGATTCCTAGCCTACTTGCACTGCAAGATGCGGGTTATCGCTTAGTGA TGGTGACTAACCAAGATGGTCTAGGTACAGATAGCTACCCGCAAGAAGAGTTCGATGCTCCACACAATATGATGATGGAG TTCTTTGAGTCTCAGGGCGTTAAGTTTGATGATGTTCTAATCTGCCCTCACTTTGATGAAGACAATTGCTCTTGCCGCAA GCCTAAGCTGGGTATGGTTAAGGAATACCTACAGGGCGGTAAAGTTGACTTCCAAAAGTCAGTCGTGATTGGTGATCGAA TGACGGATCTTCAACTTGCTGAGAACATGGCAATTCGTGGTATCCATTACGGACCAGATGCGCAAACTGAAGGCACGCTT AACTGGCCACAAATCGTTAAAGATCTGACGGTTAATGCGCGCATTGCTGAAGTGGTTCGTACCACTAAAGAAACGGACAT CAAGGTGGCAGTAAACCTTGATGAAACCGGTGGCAACAAGATCGATACTGGCATGGGTTTCTTCGATCACATGCTTGATC AAATCGCGACACACGGCGGTTTCCAAATCAACCTGACTGTGAAGGGCGATCTACACATTGATGATCACCACACAGTAGAA GATACCGCTCTTGCTTTAGGCCAAGCATTGAAAGATGCATTAGGCGATAAACGTGGTATTGGCCGCTTTGGTTTCAGCCT ACCAATGGATGAGTGTTTGGCTCAGTGTGCGCTAGACCTTTCTGGCCGTCCATACCTGAAGTTCGATGCTAAATTCAGCC GCGAGCAAGTGGGTGACCTTTCAACAGAGATGGTGGTTCACTTCTTCCGTTCTTTAACCGATACATTGGCTTGTACGCTA CACCTTTCTTCTGACGGTAATAATGATCACCACATCATTGAGAGCCTATTCAAAGCGTTTGGCCGTACTCTTCGCCAAGC AATCAAAGTTGAAGGTAACGAGTTACCAAGCAGCAAAGGCGTTCTGTAA
Upstream 100 bases:
>100_bases GTTTGATTGGATTAATTGCAGGCTGGCAAGTGAAACCAATATTTTGGGTTAGCGTTGATTTTAGCTAGGCCAGCAGATTT AAAATTAAAAGGAAGTTCAA
Downstream 100 bases:
>100_bases GGCTAACGTGAGCAAGGAAAAACAATGAAAGATCAAAAAGTCGTTATTATTGATACTGGTTGTGCCAATGTTTCCTCGGT GAAGTTTGCGATTGAACGTC
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLALQDAGYRLVMVTNQDGLGTDSYPQEEFDAPHNMMME FFESQGVKFDDVLICPHFDEDNCSCRKPKLGMVKEYLQGGKVDFQKSVVIGDRMTDLQLAENMAIRGIHYGPDAQTEGTL NWPQIVKDLTVNARIAEVVRTTKETDIKVAVNLDETGGNKIDTGMGFFDHMLDQIATHGGFQINLTVKGDLHIDDHHTVE DTALALGQALKDALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAKFSREQVGDLSTEMVVHFFRSLTDTLACTL HLSSDGNNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL
Sequences:
>Translated_362_residues MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLALQDAGYRLVMVTNQDGLGTDSYPQEEFDAPHNMMME FFESQGVKFDDVLICPHFDEDNCSCRKPKLGMVKEYLQGGKVDFQKSVVIGDRMTDLQLAENMAIRGIHYGPDAQTEGTL NWPQIVKDLTVNARIAEVVRTTKETDIKVAVNLDETGGNKIDTGMGFFDHMLDQIATHGGFQINLTVKGDLHIDDHHTVE DTALALGQALKDALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAKFSREQVGDLSTEMVVHFFRSLTDTLACTL HLSSDGNNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL >Mature_361_residues SKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLALQDAGYRLVMVTNQDGLGTDSYPQEEFDAPHNMMMEF FESQGVKFDDVLICPHFDEDNCSCRKPKLGMVKEYLQGGKVDFQKSVVIGDRMTDLQLAENMAIRGIHYGPDAQTEGTLN WPQIVKDLTVNARIAEVVRTTKETDIKVAVNLDETGGNKIDTGMGFFDHMLDQIATHGGFQINLTVKGDLHIDDHHTVED TALALGQALKDALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAKFSREQVGDLSTEMVVHFFRSLTDTLACTLH LSSDGNNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=358, Percent_Identity=68.7150837988827, Blast_Score=509, Evalue=1e-145, Organism=Escherichia coli, GI1786399, Length=150, Percent_Identity=30.6666666666667, Blast_Score=75, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6324776, Length=216, Percent_Identity=42.5925925925926, Blast_Score=162, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR013954 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD; PF08645 PNK3P [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 40320; Mature: 40189
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLALQDAGYRLVMVTNQDG CCCCCEEEEEECCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCC LGTDSYPQEEFDAPHNMMMEFFESQGVKFDDVLICPHFDEDNCSCRKPKLGMVKEYLQGG CCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCC KVDFQKSVVIGDRMTDLQLAENMAIRGIHYGPDAQTEGTLNWPQIVKDLTVNARIAEVVR CCCEECEEEECCCCHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHH TTKETDIKVAVNLDETGGNKIDTGMGFFDHMLDQIATHGGFQINLTVKGDLHIDDHHTVE HCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCHH DTALALGQALKDALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAKFSREQVGDL HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHCH STEMVVHFFRSLTDTLACTLHLSSDGNNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKG HHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC VL CC >Mature Secondary Structure SKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLALQDAGYRLVMVTNQDG CCCCEEEEEECCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCC LGTDSYPQEEFDAPHNMMMEFFESQGVKFDDVLICPHFDEDNCSCRKPKLGMVKEYLQGG CCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCC KVDFQKSVVIGDRMTDLQLAENMAIRGIHYGPDAQTEGTLNWPQIVKDLTVNARIAEVVR CCCEECEEEECCCCHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHH TTKETDIKVAVNLDETGGNKIDTGMGFFDHMLDQIATHGGFQINLTVKGDLHIDDHHTVE HCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCHH DTALALGQALKDALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAKFSREQVGDL HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHCH STEMVVHFFRSLTDTLACTLHLSSDGNNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKG HHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC VL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]